Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5310 284 2e-71 seq4842 93.3 6e-14 >seq5310 Length=161011 Score = 284 bits (314), Expect = 2e-71 Identities = 649/972 (67%), Gaps = 50/972 (5%) Strand=Plus/Plus Query 41750 TCTT-CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 41808 |||| || |||||||||| || ||| |||||||| || || ||||| ||||| || Sbjct 62627 TCTTGCTCGAGACATAACACCAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTT 62686 Query 41809 AGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG-------------- 41854 ||||| ||||| | |||||||||||||| |||||||| ||||| Sbjct 62687 CGTCTTGCCTTCTATGGATATATTTTCCATAAAATCAAAAGGATTATCAGAGTGATAAAT 62746 Query 41855 -------GTAACATT-------------ATAAAtttttttAAATCCCAATTCAGAAATCA 41894 | |||| | | ||| ||||| | || | |||| | || Sbjct 62747 CTAAACAGAAACAATTAAAACGAAAACCACAAACTTTTTCGTAACCGAGTTCAACCAGCA 62806 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 | ||| || |||||||| ||||| ||| | | ||||||||||| || | Sbjct 62807 GCCGATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAAC 62866 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 | ||||| | || ||| ||||| |||||||| || ||||| || | ||||| | Sbjct 62867 TGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCG 62926 Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATAC--AATAAA-TGTTTAAACATCAAACATGCGA 42071 | || | | | || | || | ||||| || ||||||| | ||| |||| Sbjct 62927 A-CTCAACGCGAA--CCCTAGAAGGCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGA 62983 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || || || | || || |||||||| ||||| || || ||| | | ||| |||| Sbjct 62984 AGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCA 63043 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | || || ||||| || ||||||||||||| ||| || || || || || | ||||| Sbjct 63044 TAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTT 63103 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG----TCATGTATCCAC 42247 ||||||| |||||||||| | | ||| || ||| ||| ||| ||||| Sbjct 63104 CTACTGCTGCAAAGGCAACCAAGCGTTCTGCA-AACGTAGACTTAGAATCACCAATCCAA 63162 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAG 42306 | ||||| | || || || |||||||| | ||| || || ||||| || || Sbjct 63163 TCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTAG-GTTGCTTATAGCATTGAAAAG 63221 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 | ||| | |||| ||| ||||| | ||| |||||||| | ||| |||||||| || Sbjct 63222 AAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGA 63281 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 |||||| || || || || ||||| | || || ||||| | |||| | | |||||| Sbjct 63282 ATGAATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTAC 63341 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 ||| || ||| ||||| ||| ||||| |||||||| ||||| || ||||| || Sbjct 63342 CTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAA 63401 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC-AATCATTGA 42545 ||||| |||| | |||||||| ||| || |||| | | ||| ||| ||| Sbjct 63402 TGCCAACACATATGATATAAAATGACGTTCC-CCAACCTTAAGTGACTCCCAATGTGTGA 63460 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 ||||| || | ||| || |||||||| ||||| || || || | |||||||| || | Sbjct 63461 AGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGA 63520 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 42665 || ||||||||||||||||| || ||||||| |||||| | | ||| |||||| || Sbjct 63521 AATGCCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTTTGGTTTAA 63580 Query 42666 GGATCGGTTCCA 42677 | | ||||||| Sbjct 63581 GCAAGGGTTCCA 63592 >seq4842 Length=69696 Score = 93.3 bits (102), Expect = 6e-14 Identities = 178/257 (69%), Gaps = 14/257 (5%) Strand=Plus/Plus Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT--GC 72289 ||||| ||| | ||||| ||||||| || || | ||| ||| |||||||| | Sbjct 44523 CCATTTGATTCCCCATTCGTCCCGGCTATGTAAGTCCCAAGACTG---CGAATATTATGG 44579 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || ||||||| || | || ||| |||| || | Sbjct 44580 ACATT--TACTCCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGT 44637 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-- 72407 |||| || || ||||| |||||||| |||| | | || || || || || | ||| Sbjct 44638 CATAAATACCTTCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTG 44697 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 || || ||||| | |||||| | || || ||||| || ||||||||||||||||| Sbjct 44698 GTTTCGGT--GTTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 44755 Query 72468 CAGTAGATTGTACGTCT 72484 || ||| || || |||| Sbjct 44756 CATTAGGTTATATGTCT 44772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670929066316480