Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3731 89.7 5e-13 seq4755 87.8 2e-12 >seq3731 Length=1156867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||||||||||| |||||||| || || | || || ||||| ||||| Sbjct 1054730 ATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGTTG 1054671 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | || |||||||| ||||| || || || || ||||| || | ||| Sbjct 1054670 TTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATC-TTGGATTT 1054612 Query 143101 TTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 | | ||| ||| ||| | || || | || || ||||||| || | || || || | Sbjct 1054611 TAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCCG 1054552 Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184 | | |||||| || || || ||||| Sbjct 1054551 TAAGTGTTTTCACAAAAATCTGCAT 1054527 >seq4755 Length=318840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | || || || || || | || || || ||||| |||||||| || | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || || ||||||||| |||| | |||||| ||||||||||| Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || || || ||| | | || | ||||| | || || ||| Sbjct 280469 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280410 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||| || |||| || || || ||||| |||||| Sbjct 280409 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 280362 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || || |||| || || || || |||||| Sbjct 279875 GTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCA 279816 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| | |||||| ||||||||||| || || || || || || || ||| Sbjct 279815 GCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGGATCTTAGCTTTC 279756 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || ||||| | ||| | |||||| || |||| || Sbjct 279755 ACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTC 279696 Query 143168 TTTACGAATATTTGCATAGC 143187 ||||| ||||| ||||| || Sbjct 279695 TTTACAAATATCTGCATTGC 279676 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || || |||| || || || || |||||| Sbjct 280103 GTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCA 280044 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| | |||||| ||||||||||| || || || || || || || ||| Sbjct 280043 GCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTC 279984 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || ||||| | ||| | |||||| || |||| || Sbjct 279983 ACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTC 279924 Query 143168 TTTACGAATATTTGCATA 143185 || || ||||| |||||| Sbjct 279923 TTCACAAATATCTGCATA 279906 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || || |||| || || || || |||||| Sbjct 280331 GTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCA 280272 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| | |||||| ||||||||||| || || || || || || || ||| Sbjct 280271 GCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTC 280212 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || ||||| | ||| | |||||| || |||| || Sbjct 280211 ACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTC 280152 Query 143168 TTTACGAATATTTGCATA 143185 || || ||||| |||||| Sbjct 280151 TTCACAAATATCTGCATA 280134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506855653791360