Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4124 98.7 7e-16 seq4755 86.0 5e-12 >seq4124 Length=298687 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || ||||| |||||| ||||||||||||||||||| ||||| |||||||| Sbjct 14578 TCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTA 14637 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||||| ||| || ||| | || || || || ||| || || || || ||||| Sbjct 14638 TCTTGGATTTTCGCT-TTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAAT 14696 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||| ||| || || ||||| ||||| Sbjct 14697 CGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCAT 14732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || ||||| |||||| ||||||||||||||||||| ||||| |||||||| Sbjct 13666 TCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTA 13725 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| | || || || || ||| || || || || || || Sbjct 13726 TCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATC 13785 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||| || || ||||| || |||||| Sbjct 13786 GTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 13821 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || ||||| |||||| ||||||||||||||||||| ||||| |||||||| Sbjct 14350 TCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTA 14409 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||| ||| ||| | || || || || ||| || || || || || || Sbjct 14410 TCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATC 14469 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||| || || ||||| || |||||| Sbjct 14470 GTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 14505 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || ||||| |||||| ||||||||||||||||||| ||||| |||||||| Sbjct 13894 TCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTA 13953 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||||| ||| || ||| | || || || || ||| || || || || || || Sbjct 13954 TCTTGGATTTTCGCT-TTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGAT 14012 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||| || || ||||| || |||||| Sbjct 14013 CGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 14049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || ||||| |||||| ||||||||||||||||||| ||||| |||||||| Sbjct 14122 TCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTA 14181 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||||| ||| || ||| | || || || || ||| || || || || || || Sbjct 14182 TCTTGGATTTTCGCT-TTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGAT 14240 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||| || || ||||| || |||||| Sbjct 14241 TGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 14277 >seq4755 Length=318840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || ||| || || || || || || || ||||| |||||||| || Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | || || | || || ||||| | || ||||||||||| ||| ||| Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || || || || || ||| || ||| | || || || || || || || Sbjct 280469 ATTCCCTCCTTATCCTGGATCTTAGCT-TTCACATTCTCAATAGTGTCACTTGGCTCAAC 280411 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| |||||||| || ||||| || |||||| Sbjct 280410 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 280362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362068636650168