Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4755 105 4e-18 >seq4755 Length=318840 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || |||||||| |||| |||||||| ||||| || ||||| ||||| Sbjct 280590 ACCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGA 280531 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| || | || |||| ||||| ||| ||| ||||||||||| || || | || Sbjct 280530 CAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 280471 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || || || || ||| ||| || | | ||| ||||| | || | ||| Sbjct 280470 AATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 280411 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| ||||| || || || ||||| || || || || ||||| Sbjct 280410 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | |||||||| ||||| || ||||| ||||||||| || | || || Sbjct 279888 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 279829 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| ||| ||| ||||||||||| || || | || || || || || || Sbjct 279828 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTG 279769 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || | | ||| ||||| | || | ||| |||| ||| ||||| || Sbjct 279768 GATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTT 279709 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| ||||| || || ||||| Sbjct 279708 ACCAGTCAGAGTCTTTACAAATATCTGCAT 279679 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | |||||||| ||||| || ||||| ||||||||| || | || || Sbjct 280116 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280057 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| ||| ||| ||||||||||| || || | || || || || || || Sbjct 280056 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 279997 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || | | ||| ||||| | || | ||| |||| ||| ||||| || Sbjct 279996 GATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTT 279937 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || || ||||| Sbjct 279936 ACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | |||||||| ||||| || ||||| ||||||||| || | || || Sbjct 280344 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280285 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| ||| ||| ||||||||||| || || | || || || || || || Sbjct 280284 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 280225 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || | | ||| ||||| | || | ||| |||| ||| ||||| || Sbjct 280224 GATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTT 280165 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || || ||||| Sbjct 280164 ACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318680285965104