Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4124 98.7 7e-16 seq4755 89.7 4e-13 >seq4124 Length=298687 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || || ||| ||| |||| ||||| ||||| || || || Sbjct 14085 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14144 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| |||| | ||||||||||||| ||||| ||| || | Sbjct 14145 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATT 14204 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || ||||| || || | || ||||| || || || || |||||||| Sbjct 14205 CTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCAC 14264 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 14265 AAAGATCTGCAT 14276 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || || ||| ||| |||| ||||| ||||| || || || Sbjct 14541 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14600 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| |||| | ||||||||||||| ||||| ||| || | Sbjct 14601 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATT 14660 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || ||||| || || | |||||| || || || || |||||||| || Sbjct 14661 CTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAAC 14720 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 14721 GAAAATCTGCAT 14732 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || || ||| ||| |||| ||||| ||||| || || || Sbjct 13629 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 13688 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| |||| | ||||||||||||| |||||| || || | Sbjct 13689 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCACATT 13748 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || ||||| || || | || || || || || || || |||||||| Sbjct 13749 CTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCAC 13808 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 13809 AAAGATCTGCAT 13820 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || || ||| ||| |||| ||||| ||||| || || || Sbjct 13857 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 13916 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| |||| | ||||||||||||| ||||| ||| || | Sbjct 13917 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATT 13976 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || ||||| || || | || || || || || || || |||||||| Sbjct 13977 CTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCAC 14036 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 14037 AAAGATCTGCAT 14048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || || ||| ||| |||| ||||| ||||| || || || Sbjct 14313 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14372 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||||| ||||| |||| | ||||||||||||| ||||| || || | Sbjct 14373 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCCTTCACATT 14432 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || ||||| || || | || || || || || || || |||||||| Sbjct 14433 CTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCAC 14492 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 14493 AAAGATCTGCAT 14504 >seq4755 Length=318840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 43890 ATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT 43949 ||||||| |||| | || ||||||||| || || || ||| ||||| || || || | Sbjct 280594 ATCAACCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGT 280535 Query 43950 C-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCC 44008 | | || || || |||| |||| || || || ||||| || || ||||| || || Sbjct 280534 CAGACAAAGTG-CGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCG 280476 Query 44009 TGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGC 44068 |||| | || || ||||| || || ||| || | ||| ||| || ||| Sbjct 280475 GGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGC 280416 Query 44069 TCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | ||||| || ||||| || | ||||||||||||||| ||||| Sbjct 280415 TCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354669296155104