Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5310 205 8e-48 >seq5310 Length=161011 Score = 205 bits (226), Expect = 8e-48 Identities = 599/919 (65%), Gaps = 64/919 (7%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| | ||| | |||||||||||||| || || ||||||| || |||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 12922 CATAAAATCGAAAGGATTTTTCGA-------------------ACAATAGTA-------- 12954 ||||||||| |||||||| | || ||||| | Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 12955 -------TTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007 ||||| | || | ||| | | || | ||||||| || || || |||| Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067 | ||||| | || |||||||| ||||| | || |||| ||||| | | ||| | Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 13068 ttttttCTATATCAACTGCTTCGATAACTAT-GTCTCTTATTACGTTCTCTAATGGAGGA 13126 || ||| || || || || | | || | ||| | || | ||| | ||| Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTC--AACGCGAACCCTA--GAAGGC 62949 Query 13127 TTTGATAGA---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183 ||| | | |||||||||| | ||| || || ||||| || |||||||| |||||| Sbjct 62950 TTTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTA 63009 Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243 || |||| ||| || ||| | | || |||||||| ||||| || || | ||||||| Sbjct 63010 CTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAAT 63069 Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTT 13303 ||||| || || || || ||||| | |||||| ||||||||||| || | ||| | | Sbjct 63070 ATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGT 63129 Query 13304 TCACCATACGTACTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT 13362 || || ||||| | || | || | ||||| | ||||| | ||||||| Sbjct 63130 TCTGCAAACGTA-GACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGC 63188 Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422 || || | | || ||| || || || | | | | | |||| ||| |||| || Sbjct 63189 TACACAAGTTAGGTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGAT 63248 Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482 ||| ||||| || | || |||||||| ||||||||||| || || ||||| || | Sbjct 63249 ATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCAT 63308 Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGT 13541 ||||||||||| | | |||| | | ||| || || || | ||| | ||| ||||| Sbjct 63309 CCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACT-AAAGCGTTCCAGTAAGT 63367 Query 13542 TTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttt 13599 |||| |||||| || ||||| || ||||| || || | || || | ||||| Sbjct 63368 TTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGAT--ATAAA--- 63422 Query 13600 tttttCGTTTTCTGACAACTTTAA-------CCAATCTGGAAAATCTTTTGATAAATCTA 13652 | |||| | |||| |||| ||||| || || ||||| || ||||| | Sbjct 63423 -ATGACGTTCCC---CAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCA 63478 Query 13653 CCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTAT 13712 |||| || || ||||| |||||||| || ||||| || || | ||| ||||| | || Sbjct 63479 CCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGAT 63538 Query 13713 AAACAATGGGAAACACAAC 13731 | | ||||| || | ||| Sbjct 63539 ATTCTATGGGGAAAAGAAC 63557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430850832925296