Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5310 226 7e-54 seq3731 168 2e-36 seq4124 150 4e-31 seq4755 147 5e-30 seq11996 127 5e-24 >seq5310 Length=161011 Score = 226 bits (250), Expect = 7e-54 Identities = 416/604 (69%), Gaps = 17/604 (3%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 |||||| | | ||||| | || || ||| | || |||||| ||| | |||||| Sbjct 63572 AACCCACACCGTTTTGTTCTTTTCCCCATAGAATATCATGATATCTGGCATTTCTACAAA 63513 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 |||| || |||||||| |||||||||||||| || ||| |||| | ||||| | | || Sbjct 63512 AAGGCGGTGGCTTCTTTCTGGACTGTAGAAGAGGTGGATTTGTCCAAAGACTTCACACAT 63453 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 ||| | | || | ||| | |||||||| ||| | | || || ||||| Sbjct 63452 TGGGAGTCACTTAAGGTTGGGGAACGTCATTTTATATCATATGTGTTGGCATTCTTTGCG 63393 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | |||||||| || ||| ||||| || | || || |||||||||||||||| Sbjct 63392 GCGAGTGATGGAATAGTTCTAGAAAACTTACTGGAACGCTTTAGTCAAGAGGTACAGATC 63333 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 || || | | |||||||| || | ||||||||||| || ||||||||||| || ||| Sbjct 63332 CCGGAGGTTCGCTGTTTTTATGGGATGCAGATAGCTATCGAGAATATTCATTCTGAAATG 63273 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC--TATTTT 269048 ||| |||| |||| ||||| ||||| | || | ||| || |||| | |||| Sbjct 63272 TACTCTCTACTAATCGATACGTATATCAAAGA----CTCTAAAGAAAGAGACTTTCTTTT 63217 Query 269049 C--TTCTATGAG--AACTATGGAC-TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATG 269103 | | |||| || | ||| || ||||| |||||| || ||||||| || | || Sbjct 63216 CAATGCTATAAGCAACCTA---ACTTGTGTAGCGAAAAAAGCTCAATGGGCATTGGATTG 63160 Query 269104 GATAAACGA---TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGG 269160 ||| || || | | | | |||| | || ||||| ||||| || |||||||| Sbjct 63159 GATTGGTGATTCTAAGTCTACGTTTGCAGAACGCTTGGTTGCCTTTGCAGCAGTAGAAGG 63100 Query 269161 TATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 | || || || || || || ||||| |||||| ||||||| |||| |||||||| Sbjct 63099 AGTTTTTTTCTCCGGCAGCTTCGCGGCTATATTTTGGCTGAAGAAGCGAGGACTTATGCC 63040 Query 269221 AGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 ||||| | || ||| || || || || || |||||||| ||||| || |||||||| Sbjct 63039 TGGATTGTCCTTTAGTAATGAGTTAATCAGTAGAGACGAAGGATTACATTGTGACTTCGC 62980 Query 269281 TTGT 269284 |||| Sbjct 62979 TTGT 62976 >seq3731 Length=1156867 Score = 168 bits (186), Expect = 2e-36 Identities = 180/237 (76%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTA-GATGTAATGTAGATTCTTTCTGAATATTATAG 104386 |||| ||||| | || | ||| || | |||| | ||||||||||| ||| || |||||| Sbjct 1054759 TTATACCCCCACGAAGTCGAAGAACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAG 1054700 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 ||||| | ||||| || ||||| |||||||| ||||||||||| || | |||||||| Sbjct 1054699 TCAGAGACGGTTCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCT 1054640 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || || || |||||||| || || || || || || ||| | ||||| ||| Sbjct 1054639 GGTGGGATACCCTCTTTATCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGC 1054580 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| || || ||||||||||| ||||| |||||||| ||| Sbjct 1054579 TCAACTTCAAGCGTTATAGTTTTCCCCGTAAGTGTTTTCACAAAAATCTGCATGTTG 1054523 >seq4124 Length=298687 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || ||||| || || || |||||||| || |||||||||| || | ||| || Sbjct 13608 AAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATC 13667 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||||| ||||| || || | | ||||| |||||||| || ||||||||||| Sbjct 13668 TTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATC 13727 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || || || ||||| || | || || ||||| || ||||| | ||| || || Sbjct 13728 TTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGT 13787 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | ||| || ||||| |||||||| Sbjct 13788 CTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 150 bits (166), Expect = 4e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || ||||| ||||| || |||||||| || |||||| Sbjct 14503 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCA 14562 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| ||||| | ||||| ||||| || || | | ||||| |||||| Sbjct 14563 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 14622 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || || || ||||| ||||| || | || || ||||| || Sbjct 14623 GGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCA 14682 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 ||||| | ||||| ||||| || || | || || || || ||||||||| |||| Sbjct 14683 ACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCATTCTGTG 14738 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || ||||| || || || |||||||| || |||||| Sbjct 13819 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCA 13878 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| ||||| | ||||| ||||| || || | | ||||| |||||| Sbjct 13879 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 13938 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || || || ||||| ||||| || | || || ||||| || Sbjct 13939 GGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCA 13998 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || || | ||| || ||||| |||||||| Sbjct 13999 ACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || ||||| || || || |||||||| || |||||| Sbjct 14047 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCA 14106 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| ||||| | ||||| ||||| || || | | ||||| |||||| Sbjct 14107 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 14166 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || || || ||||| ||||| || | || || ||||| || Sbjct 14167 GGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCA 14226 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || || | ||| || ||||| |||||||| Sbjct 14227 ACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || ||||| || || || |||||||| || |||||| Sbjct 14275 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCA 14334 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| ||||| | ||||| ||||| || || | | ||||| |||||| Sbjct 14335 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 14394 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || || || || || ||||| || | || || ||||| || Sbjct 14395 GGAATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCA 14454 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || || | ||| || ||||| |||||||| Sbjct 14455 ACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 >seq4755 Length=318840 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || || || || || || || |||||||| | ||| | ||| || || || || Sbjct 279881 TGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGC 279822 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| | |||||||| ||||| || || || |||||||| ||||| Sbjct 279821 TTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGGATCTTA 279762 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || || || || || || | ||||| ||||||||||| Sbjct 279761 GCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTC 279702 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || |||||||||||||||||| Sbjct 279701 AGAGTCTTTACAAATATCTGCATT 279678 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || || || || || || || |||||||| | ||| | ||| || || || || Sbjct 280109 TGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGC 280050 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| | |||||||| ||||| ||||| || |||||||| ||||| Sbjct 280049 TTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTA 279990 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || || || || || || | ||||| ||||||||||| Sbjct 279989 GCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTC 279930 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||||||||| Sbjct 279929 AGAGTCTTCACAAATATCTGCAT 279907 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || || || || || || || |||||||| | ||| | ||| || || || || Sbjct 280337 TGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGC 280278 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| | |||||||| ||||| ||||| || |||||||| ||||| Sbjct 280277 TTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTA 280218 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || || || || || || | ||||| ||||||||||| Sbjct 280217 GCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTC 280158 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||||||||| Sbjct 280157 AGAGTCTTCACAAATATCTGCAT 280135 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || |||||||| | ||| | ||| || || || || || ||| Sbjct 280559 GTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCA 280500 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| | |||||||| ||||| ||||| || |||||||| ||||| ||||| Sbjct 280499 GCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTC 280440 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || || || | ||||| ||||||||||| || || Sbjct 280439 ACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTC 280380 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 280379 TTCACAAATATCTGCAT 280363 >seq11996 Length=10337 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || ||||| ||||| || |||||| | || |||||||||| || | ||| ||||| Sbjct 10336 ACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTCC 10277 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| | ||||| || || | | ||||| |||||||| || ||||||||||| ||| Sbjct 10276 AACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGA 10217 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTAT-CGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| ||||| || | || | | ||||| || ||||| | ||| || | ||| Sbjct 10216 ATTTTCGCTTTCACATTCTCAATCGTGTGCACTAGGCTCAACCTCCAATGTGATTGGCTT 10157 Query 104530 ACCAGTAAGTGT-TTTTACAAATATCTGCATTTT 104562 || | | ||| || ||||| || |||||||| Sbjct 10156 CCCCGGCAATGTGCTTCACAAAGATTTGCATTTT 10123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151028884589984