Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq8745 95.1 1e-14 seq11308 89.7 6e-13 >seq8745 Length=35083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| |||||||| || |||||||||||| |||||||| || || || || Sbjct 21345 CAAAAAGGTACATGTGGAATACGTTATCGTCAAGAGGATATGCCGTTCACATGTGAAGGA 21286 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| |||||||||| ||||||||| |||||||||| ||||| Sbjct 21285 ATTACACCAGATATTATTATTAATCCACATGCTATTCCAAGTCGTATGAC 21236 >seq11308 Length=25988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Minus Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281 |||||||||||||| | | |||| ||||| | || |||| ||| ||||||| Sbjct 325 TCACCTTCTTCACGCTCAGTAAAACCTAACCCATCTAAAA---ATTCACGGGATCCATTC 269 Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339 |||||||||| ||||||| ||||| | | | || | ||||||||||||||| || Sbjct 268 GCATCCCAAAAATGTACA--TTTTTCTCCGACAGTTCACGAGAATTTGTAGATCCACGAA 211 Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 |||||||| | |||||||| ||||| || |||||| Sbjct 210 TAAACCATAATAACTCTTCTACAATTCCCCGAAAAAACA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595685432476800