Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4755 125 6e-24 seq3731 109 5e-19 seq4124 91.5 1e-13 >seq4755 Length=318840 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| | ||| ||||||||||||| ||| || |||||||| | ||| || || | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| |||||||||||| || || |||||||||| | ||| ||||| |||||| Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || || || || | || || || || || | | ||||||| | ||| || || Sbjct 280469 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCA-CTTGGCTCAAC 280411 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || ||||| ||||| |||||||| |||||||| Sbjct 280410 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| || |||||||| | ||| || || || |||| |||||| Sbjct 280116 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280057 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||||||||| | ||| ||||| |||||||| || || || || | Sbjct 280056 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 279997 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || || || || || | | ||||||| | ||| || || || | || || || | Sbjct 279996 GATCTTAGCTTTCACATTCTCAATAGTGTCA-CTTGGCTCAACTTCCAAAGTAATCGTCT 279938 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| |||||||| |||||||| Sbjct 279937 TACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| || |||||||| | ||| || || || |||| |||||| Sbjct 280344 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280285 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||||||||| | ||| ||||| |||||||| || || || || | Sbjct 280284 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 280225 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || || || || || | | ||||||| | ||| || || || | || || || | Sbjct 280224 GATCTTAGCTTTCACATTCTCAATAGTGTCA-CTTGGCTCAACTTCCAAAGTAATCGTCT 280166 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| |||||||| |||||||| Sbjct 280165 TACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| || |||||||| | ||| || || || |||| |||||| Sbjct 279888 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 279829 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||||||||| | ||| ||||| |||||||| || || || || | Sbjct 279828 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTG 279769 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || || || || || | | ||||||| | ||| || || || | || || || | Sbjct 279768 GATCTTAGCTTTCACATTCTCAATAGTGTCA-CTTGGCTCAACTTCCAAAGTAATCGTCT 279710 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| || ||||| |||||||| Sbjct 279709 TACCAGTCAGAGTCTTTACAAATATCTGCAT 279679 >seq3731 Length=1156867 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| ||||| || |||| || | | ||| |||||||| || ||||| ||||| Sbjct 1054682 ATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTT 1054623 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| || || || || | | || ||||| | || || |||| ||| || Sbjct 1054622 ATCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTAT 1054563 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATT 95021 ||||| || ||||| ||||||||||| ||||||||| | || | ||||| Sbjct 1054562 AGTTTTCCCCGTAAGTGTTTTCACAAAAATCTGCATGTTGACTAAATATT 1054513 >seq4124 Length=298687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 |||| ||||| ||| || | | || | || | ||| ||||| || ||||| || | | Sbjct 13582 AAATATTACAGTCCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATG 13641 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || ||| || || ||| |||| |||||| || | || || || | || Sbjct 13642 TTGTAGTCAG--ATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTT 13699 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || || ||||||||||||||||| || | |||||| ||||| || | | |||| Sbjct 13700 GTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGT 13759 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | || || || | ||||| || || || || | || |||||||||||||||| Sbjct 13760 CACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCA 13819 Query 95007 T 95007 | Sbjct 13820 T 13820 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| ||||| || ||||| || | ||| || || ||| || || ||| |||| | Sbjct 14301 GTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAG--ATAACGTACGACCATCTTCCAAC 14358 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| || | || || || | ||| || || ||||||||||||||||| || | ||| Sbjct 14359 TGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATT 14418 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||| || | | |||||| | || || || | ||||| || || || Sbjct 14419 TTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCC 14478 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||||||||||||||| Sbjct 14479 GTCAATGTCTTCACAAAGATCTGCAT 14504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448150840025280