Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3799 190 3e-44 seq20299 167 4e-37 seq4758 159 5e-35 >seq3799 Length=320912 Score = 190 bits (210), Expect = 3e-44 Identities = 191/248 (77%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| Sbjct 237108 TCTACGTGATAACATCCAAGGTATCACAAAGCCAGCCATCCGTCGTCTTGCTCGCCGTGG 237167 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||||| ||||||||||| |||| || |||| ||||| |||| ||||| | || Sbjct 237168 TGGTGTGAAGCGCATCTCTGGATTGATCTACGAGGAGACTCGTGGTGTTCTGAAGGTGTT 237227 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| |||| |||||| || ||| || || || || || | ||||| || Sbjct 237228 TCTGGAGAACGTAATCCGTGATGCAGTCACCTACACAGAACATGCCAAGAGGAAGACAGT 237287 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| ||||||| ||||| |||| | || ||||| || Sbjct 237288 GACAGCTATGGATGTTGTGTATGCTCTGAAACGCCAAGGTCGTACTTTGTACGGTTTCGG 237347 Query 16693 AAGTTAAT 16700 |||||| Sbjct 237348 TGGTTAAT 237355 >seq20299 Length=1610 Score = 167 bits (184), Expect = 4e-37 Identities = 189/252 (75%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||||||||| |||| ||||| |||||||||| ||||||||| ||||| Sbjct 271 TCTACGTGATAACATCCAAGGTATCATTAAGCCGGCTATCCGTCTTCTGGCTCGCCGTGG 330 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || || ||||||||||| |||| || |||| ||||| |||| | ||| || Sbjct 331 TGGTGTGAAACGCATCTCTGGATTGATCTACGAGGAGACTCGTGGTGTTCTTAAGGCGTT 390 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| |||| |||||| || ||| || || || || || | ||||| || Sbjct 391 TCTGGAGAACGTAATCCGTGATGCAGTCACCTACACAGAACATGCCAAGAGGAAGACAGT 450 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT-G 16691 | | |||||||| || ||||| |||| || ||||| |||| | || |||||| | Sbjct 451 GATAGCTATGGATATTGTATATGCTCTGAAGCGCCAAGGTCGTACTTTGTACGGTTTTCG 510 Query 16692 GAAGTTAATCTT 16703 | |||||| || Sbjct 511 GTGGTTAATATT 522 >seq4758 Length=169765 Score = 159 bits (176), Expect = 5e-35 Identities = 195/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| | ||||| | | || || ||||| || || || || || ||||||||||| Sbjct 163294 GCTAAAAGACATCGGAAAGTGCTACGTGATAATATTCAGGGGATAACAAAGCCAGCTATT 163235 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || ||||||||||| || || || || | ||||| || |||| ||||||| | Sbjct 163234 CGTCGCCTTGCTCGTCGTGGAGGTGTAAAACGCATTTCTGGTTTAATCTACGAAGAGACT 163175 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| | | ||| || | ||| || | || || ||| Sbjct 163174 CGTGGTGTGTTGAAAGTATTCCTTGAAAACGTAATTCGTGACGCGGTTACGTACACGGAG 163115 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || |||||||| | || ||||| ||||||||||| || Sbjct 163114 CACGCCAAACGGAAGACAGTGACGGCCATGGATGTTGTTTATGCTTTGAAACGTCAGGGT 163055 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | |||| |||||||| |||| Sbjct 163054 CGCACCCTTTACGGTTTTGGTGGTTA 163029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052298438264