Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5310 168 7e-37 >seq5310 Length=161011 Score = 168 bits (186), Expect = 7e-37 Identities = 405/610 (66%), Gaps = 9/610 (1%) Strand=Plus/Plus Query 21455 AATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTAT 21513 |||||| || ||||||| | ||| || || |||||||| || ||||| || ||||| || Sbjct 62955 AATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGAT 63014 Query 21514 TAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGA 21573 ||| |||||| ||| | || || ||||| | ||||| ||| || | ||||||||| | Sbjct 63015 TAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGC 63074 Query 21574 CGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 ||| || ||| || || || |||| || || || || ||||| ||||| || ||||| Sbjct 63075 CGCGAA-GCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTG 63133 Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 | | ||||| | ||| ||||| | |||||||| || |||| | || Sbjct 63134 CAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACAC 63193 Query 21693 AATCAA--TTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACA-TCGGTTATGN 21749 || | ||| | ||||| || |||||| | | |||| | || | || | || Sbjct 63194 AAGTTAGGTTGCTT--ATAGCATTGAAAAGAAAGTCTCTTTCTT-TAGAGTCTTTGATAT 63250 Query 21750 NNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATC 21809 | |||||||||||||| ||||| || || |||||||| | | Sbjct 63251 ACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCATCC 63310 Query 21810 CGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTT 21869 | |||||||| | |||| | || ||||| | ||| |||| ||||||| Sbjct 63311 CATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTT 63370 Query 21870 CATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTT 21929 | |||||||||||||| || ||||| |||||||| | || | |||||||| |||| Sbjct 63371 CTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACGTT 63430 Query 21930 CGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTG 21989 | | | | | | | ||||| | || ||||| || ||||| || ||||| | Sbjct 63431 CCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAG 63490 Query 21990 TCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAA 22049 |||| || ||| | |||||||| || | | ||||||||||| |||| ||| || | Sbjct 63491 TCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGGGA 63550 Query 22050 ATATTACAAA 22059 | | ||||| Sbjct 63551 AAAGAACAAA 63560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531734261859520