Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5310 266 4e-66 seq4842 96.9 4e-15 seq4148 82.4 1e-10 >seq5310 Length=161011 Score = 266 bits (294), Expect = 4e-66 Identities = 642/971 (66%), Gaps = 48/971 (5%) Strand=Plus/Plus Query 32989 TCTT-CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33047 |||| || |||||||||| || ||| |||||||| || || ||||| ||||| || Sbjct 62627 TCTTGCTCGAGACATAACACCAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTT 62686 Query 33048 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG-------------- 33093 || || ||||| | |||||||||||||| |||||||| ||||| Sbjct 62687 CGTCTTGCCTTCTATGGATATATTTTCCATAAAATCAAAAGGATTATCAGAGTGATAAAT 62746 Query 33094 -------GTAACATT-------------ATAAAtttttttAAATCCCAATTCAGAAATCA 33133 | |||| | | ||| ||||| | || | |||| | || Sbjct 62747 CTAAACAGAAACAATTAAAACGAAAACCACAAACTTTTTCGTAACCGAGTTCAACCAGCA 62806 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 | ||| || | |||||| ||||| ||| | | ||||||||||| || | Sbjct 62807 GCCGATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAAC 62866 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | ||||| | || ||| ||||| |||||||| || ||||| || | ||||| | Sbjct 62867 TGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCG 62926 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGATGC--AATAAA-TGTTTAAACATCAAACATGCGA 33310 | |||| | || | || | ||||| || ||||||| | ||| |||| Sbjct 62927 ACTCAACGCGAACC---CTAGAAGGCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGA 62983 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || || || | || ||||||||||| |||| || || ||| | | ||| |||| Sbjct 62984 AGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCA 63043 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | || || ||||| || ||||||||||| | ||||| || || || || | ||||| Sbjct 63044 TAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTT 63103 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT----GTCATGTATCCAC 33486 ||||||| |||||||||| | | ||| || ||| || ||| ||||| Sbjct 63104 CTACTGCTGCAAAGGCAACCAAGCGTTCTGCA-AACGTAGACTTAGAATCACCAATCCAA 63162 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAG 33545 | ||||| | || || || |||||||| | ||| | ||| ||||| || || Sbjct 63163 TCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTA-GGTTGCTTATAGCATTGAAAAG 63221 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 | ||| | |||| ||| ||||| | ||| |||||||| | ||| |||||||| || Sbjct 63222 AAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGA 63281 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 |||||| || || || || ||||| | || || ||||| | | |||| | |||||||| Sbjct 63282 ATGAATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTAC 63341 Query 33666 TTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 ||| || ||| |||||| || ||||| |||||||| ||||| || ||||| || Sbjct 63342 CTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAA 63401 Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33785 ||||| |||| | |||||||| ||| | | ||| | ||||| ||| Sbjct 63402 TGCCAACACATATGATATAAAATGACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAA 63461 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||||| || | ||| || ||||| || ||||| || || ||| | |||||||| || | Sbjct 63462 GTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAA 63521 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 33905 | |||||| |||| ||||| || ||||||| |||||| | | ||| |||||| ||| Sbjct 63522 ATGCCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTTTGGTTTAAG 63581 Query 33906 GATGGGTTCCA 33916 | |||||||| Sbjct 63582 CAAGGGTTCCA 63592 >seq4842 Length=69696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || ||||| || ||||||| || | || ||| |||| |||||||| ||||| Sbjct 44589 CCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCATAAATACCT 44648 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63612 |||||||||||||| |||| | | || || || || || | | |||| || | Sbjct 44649 TCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGTTTCG--GTG 44706 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| | |||||| | || || ||||| || ||||||||||||||||| | ||| || | Sbjct 44707 TTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATTAGGTTAT 44766 Query 63673 ACGTCT 63678 | |||| Sbjct 44767 ATGTCT 44772 >seq4148 Length=337133 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 28475 TGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATATGTGTATTAT 28534 ||||||| || ||||||||||| ||||| || || || ||||||||| |||| | ||| Sbjct 210394 TGACCTGTGTCAGTGATCTCCAGTCCATATTTGCACTACCTAAATAACTATGCATCGTAT 210453 Query 28535 CAGATATCCAAAATTTTGTATGAAGAACTCCTC 28567 || || ||| ||||| ||||| |||| ||||| Sbjct 210454 CAACTAACCATAATTTCGTATGCAGAATTCCTC 210486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622752155231680