Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4842 120 8e-22 seq11308 86.0 2e-11 >seq4842 Length=69696 Score = 120 bits (132), Expect = 8e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 364124 GGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATT 364183 ||| |||||| || || | || || || ||||| | |||| |||||||| ||||||| Sbjct 42916 GGTATGCCATTATTGAATGCCAAATCGAAACAGGTAATCCCTTCATGTTGTATAAAGATT 42857 Query 364184 CGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTA 364243 ||||||| ||||| |||||||| ||||| | || ||||||| ||||||||||| | Sbjct 42856 CGTGCAATCGCAAATCCAACCACCAGCATTTAGGCACAATTCGTTGTAGCAACCTATGCA 42797 Query 364244 CCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 | || || |||||||| | | || || ||||| ||||| ||||| Sbjct 42796 CAGAAATAGTTGAATACTCTTCACCAGATGAGACAGCCGTCTGTAA 42751 Score = 96.9 bits (106), Expect = 9e-15 Identities = 209/310 (67%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 || || ||| | ||||| || ||| |||||| | || || ||||| || || ||| Sbjct 44422 GTCCCAATGTTGCGTGTATTCAACAGTACTGCACGATATGTTGACCAAGGGGGTAACAAG 44363 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 ||| || || |||||||| || || || ||| ||| | ||| | ||| |||| | Sbjct 44362 CGCCCTGGAGCCTTTGCTATATACCTGGAACCTTGGCATCCTGATGTGTTTCAGTTCATA 44303 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | |||||||| || || ||| ||| | |||||||| ||| | || | |||||| Sbjct 44302 GAAATGCGGAAAAATACTGGTGCAGAAGAAATTCGTGCACGGGATTTATTTTTTGCACTC 44243 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC 364011 ||| | ||||| |||||| || || || || | || ||| | || | Sbjct 44242 TGGATACCTGACTTGTTTATGCGTCGGGTCGAATCAAACGATAAGTGGACGCTAATGGAT 44183 Query 364012 CCACACGAATGTCCAGGTCTTTCC-GATGTATGGGGTGACGACTATGTTGCTCTATACGA 364070 || || ||||||||||| ||| || || | |||||||| | | || ||||| || || Sbjct 44182 CCTCATGAATGTCCAGG-CTTGCCTGAACTGTGGGGTGAAAAATTTGAAGCTCTGTATGA 44124 Query 364071 AAAGTATGaa 364080 || |||||| Sbjct 44123 GAAATATGAA 44114 >seq11308 Length=25988 Score = 86.0 bits (94), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 111350 GGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGC 111409 ||||||||| ||||| | | ||||||||||| ||| ||||||| | |||||| | Sbjct 182 GGGAATTGTAGAAGAGTTATTATGGTTTATTCGTGGATCTACAAATTCTCGTGAACTGTC 241 Query 111410 AGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGAT 111461 | ||||||||| | ||||||||| |||||||| ||||| ||| ||||| Sbjct 242 GGAGAAAAATGTACATTTTTGGGATGCGAATGGATCCCGTGAATTTTTAGAT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302935317987536