Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3731 87.8 2e-12 >seq3731 Length=1156867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| |||||| | || || ||| | || || | ||||| ||| | Sbjct 1054523 CAACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCC 1054582 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || || || ||| || || || || ||||| || || || || || Sbjct 1054583 TGCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGA 1054642 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | || |||| | ||||| ||||| ||||||| |||| |||| || || Sbjct 1054643 TCAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTA 1054702 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 |||||| || ||||||||||| ||||| Sbjct 1054703 TAACATACAGTAAGAATCTACACTTCAT 1054730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429804752362440