Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5310 257 2e-63 seq4842 82.4 1e-10 >seq5310 Length=161011 Score = 257 bits (284), Expect = 2e-63 Identities = 642/972 (66%), Gaps = 50/972 (5%) Strand=Plus/Plus Query 32346 TCTT-CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 32404 |||| || |||||||||| || ||| |||||||| || || ||||| ||||| || Sbjct 62627 TCTTGCTCGAGACATAACACCAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTT 62686 Query 32405 AGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG-------------- 32450 || || ||||||| |||||||||||||| ||||| || ||||| Sbjct 62687 CGTCTTGCCTTCTATGGATATATTTTCCATAAAATCAAAAGGATTATCAGAGTGATAAAT 62746 Query 32451 -------GTAACATT-------------ATAAAtttttttAAATCCCAATTCAGAAATCA 32490 | |||| | | ||| ||||| | || | |||| | || Sbjct 62747 CTAAACAGAAACAATTAAAACGAAAACCACAAACTTTTTCGTAACCGAGTTCAACCAGCA 62806 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 | ||| || | ||||| ||||| ||| | | ||||||||||| || | Sbjct 62807 GCCGATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAAC 62866 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | ||||| | || ||| ||||| |||||||| || ||||| || | ||||| | Sbjct 62867 TGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCG 62926 Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATAC--AATAAA-TGTTTAAACATCAAACATGCGA 32667 | || | | | || | || | ||||| || ||||||| | ||| |||| Sbjct 62927 A-CTCAACGCGAA--CCCTAGAAGGCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGA 62983 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | || || |||| || ||||||||||| ||||| || || ||| | | ||| |||| Sbjct 62984 AGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCA 63043 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | || || ||||| || ||||||||||| | ||| || || || || |||| ||||| Sbjct 63044 TAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTT 63103 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT----GTCATGTATCCAC 32843 ||||||| |||||||||| | | ||| || ||| || ||| ||||| Sbjct 63104 CTACTGCTGCAAAGGCAACCAAGCGTTCTGCA-AACGTAGACTTAGAATCACCAATCCAA 63162 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGA 32901 | ||||| | || || || |||||||| | ||| || ||||||||| || | Sbjct 63163 TCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTAGGTTG-CT-TATAGCATTGAAAA 63220 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 || ||| | |||| ||| ||||| | ||| ||||| || | ||| |||||||| | Sbjct 63221 GAAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAG 63280 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 ||||||| || || || || || || | || || || || | | |||| | ||||||| Sbjct 63281 AATGAATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTA 63340 Query 33022 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 | ||| || ||| ||||| ||| ||||| |||||||| ||||| || ||||| | Sbjct 63341 CCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGA 63400 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141 | ||||| |||| | |||||||| ||| | | ||| | ||||| ||| Sbjct 63401 ATGCCAACACATATGATATAAAATGACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGA 63460 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 ||||| || | |||||| ||||| || ||||| || || ||| | |||||||| || | Sbjct 63461 AGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGA 63520 Query 33202 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAA 33261 || |||||| |||||||||| || || |||| |||||| | | ||| ||| | || Sbjct 63521 AATGCCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTTTGGTTTAA 63580 Query 33262 GGATTGGTTCCA 33273 | | ||||||| Sbjct 63581 GCAAGGGTTCCA 63592 >seq4842 Length=69696 Score = 82.4 bits (90), Expect = 1e-10 Identities = 131/186 (70%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || ||||| || ||||||| || | || ||| |||| || ||||| || || Sbjct 44589 CCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCATAAATACCT 44648 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAG 63467 ||||| |||||||| |||| | | || || || || || | ||| || || | Sbjct 44649 TCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGTTTCGGT--G 44706 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| | |||||| | || || ||||| || ||||||||||||||||| | ||| || | Sbjct 44707 TTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATTAGGTTAT 44766 Query 63528 ACGTCT 63533 | |||| Sbjct 44767 ATGTCT 44772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633433609820800