Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4755 116 3e-21 seq4124 105 6e-18 seq11996 84.2 2e-11 >seq4755 Length=318840 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| ||||||||||||||| |||| ||||| | || || | ||||| ||| | Sbjct 279677 CAATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAA 279736 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||| ||| |||| || ||| || || || |||||||| || || | Sbjct 279737 GTGACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATC 279796 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || || || | || |||| ||||||| || || |||| Sbjct 279797 AACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA 279856 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| || || || ||||| || ||||| Sbjct 279857 ACATCCAAAAGGAGTCGACTCTACACTTGGTGCT 279890 >seq4124 Length=298687 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | |||||| | || || ||| | | Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| |||||| || |||||||| ||||| ||||||||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || ||||| || ||||||| ||| || | || ||||| Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || |||| Sbjct 14324 ATTCAGAAGGAGTCAACTTTACA 14302 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | |||||| | || || ||| | | Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| | |||| ||| || |||||||| ||||| |||||||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAA-GATAAAGAAGGTATTCCTCCTGACCA 13702 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || ||||| || ||||||| ||| || | || ||||| Sbjct 13701 ACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAA 13642 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || |||| Sbjct 13641 CATTCAGAAGGAGTCAACTTTACA 13618 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | |||||| | || || ||| | | Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| |||||| || |||||||| ||||| ||||||||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || ||||| || ||||||| ||| || | || ||||| Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || |||| Sbjct 13868 ATTCAGAAGGAGTCAACTTTACA 13846 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | |||||| | || || ||| | | Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| |||||| || |||||||| ||||| ||||||||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || ||||| || ||||||| ||| || | || ||||| Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || |||| Sbjct 14096 ATTCAGAAGGAGTCAACTTTACA 14074 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || | || || | || || ||| | Sbjct 14733 AATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 14674 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| |||| |||||| || |||||||| ||||| |||||||| Sbjct 14673 TGACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCA 14614 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || ||||| || ||||||| ||| || | || ||||| Sbjct 14613 ACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAA 14554 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || |||| Sbjct 14553 CATTCAGAAGGAGTCTACTTTACA 14530 >seq11996 Length=10337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAG-ACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||||| ||||| ||| || ||| | || || | |||||| | || || ||| | Sbjct 10125 AATGCAAATCTTTGTGAAGCACATTGCCGGGGAAGCCAATCACATTGGAGGTTGAGCCTA 10184 Query 25057 CTG-ACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||| || ||| |||| || |||| ||| || |||||||| ||||| ||||| Sbjct 10185 GTGCACACGATTGAGAATGTGAAAGCGAAAATTCAA-GATAAAGAAGGTATTCCTCCTGA 10243 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || || || || | ||| || ||||||| ||| || | || || Sbjct 10244 CCAACAACGTTTGATATTCGCTGGTACACAGTTGGAAGATGGTCGTACGTTATCTGACTA 10303 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| | ||| || || || || |||| Sbjct 10304 CAACACTCAGAAGGAGTCTACTTTACA 10330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433195716878120