Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5310 239 5e-58 >seq5310 Length=161011 Score = 239 bits (264), Expect = 5e-58 Identities = 429/623 (69%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || || ||||| |||||| |||||||||| || |||||||| || || | || Sbjct 62977 CAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAAT 63036 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | |||||||| ||||| ||||||||||| | || || || || || ||||| Sbjct 63037 CCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAA 63096 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG---GAATTACTG 93268 | ||||| || |||||||| || || | ||||| ||||| | | |||| || Sbjct 63097 ACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAACGTAGACTTAGAATCACCA 63156 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGC 93327 ||||| | || ||||| | ||||||||| | ||||| ||| ||| | ||||| Sbjct 63157 ---ATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTAG-GTTGCTTATAGC 63212 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || || | |||| || | || ||| || || |||||||||| ||||| || Sbjct 63213 ATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTA 63272 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||||||||||| | |||||| || || || || | || || ||||| | | | |||| Sbjct 63273 CATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGG 63332 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 |||||| || |||||| ||| | || | | ||||| ||||| ||||| || Sbjct 63333 GATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGC 63392 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 ||||| || ||||| | || ||||||||| || || | ||||| ||||| Sbjct 63393 CGCAAAGAATGCCAACACATATGATATAAAATGACGTTCCCCAACCTTAAGTGACTCCCA 63452 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 || | | ||||| || | ||| || ||||| |||||||| || || || | || || Sbjct 63453 ATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTT 63512 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 |||||| | || ||| || || ||||||| || || || | |||||||| | ||||| Sbjct 63513 TTTGTAGAAATGCCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTT 63572 Query 93688 ATCTTTTAGTAACGGCTCTAGTT 93710 ||| || || || || |||| Sbjct 63573 TGGTTTAAGCAAGGGTTCCAGTT 63595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556686446883520