Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3731 129 5e-25 seq4755 116 3e-21 seq4124 100 2e-16 >seq3731 Length=1156867 Score = 129 bits (142), Expect = 5e-25 Identities = 172/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 || || || ||||| |||||||| ||||| | || || ||||| | || |||||||| Sbjct 1054518 TTAGTCAACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTT 1054577 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || | | ||||| | || | | || ||||| ||||| || |||||||| ||| Sbjct 1054578 GAGCCTGCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCA 1054637 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || ||||||||||||||||| ||||| |||||||| | || ||| | |||||||| Sbjct 1054638 CCAGATCAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCT 1054697 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACAT-TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || ||||||| || | ||| || ||| | ||| | || || ||| Sbjct 1054698 GACTATAACATACAGTAAGAATCTACACTTCATCTTGGTTCTTCGACTTCGTGGGGGT 1054755 >seq4755 Length=318840 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || ||||| ||| | ||| | ||||| || | | Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || || || |||||||| ||||| ||||||||| Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||| | |||||| ||||| | || || |||||| Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280542 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||| || || || | || || || || ||| | || || |||| Sbjct 280543 ATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGGTGGTT 280591 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || ||||| ||| | ||| | ||||| || | | Sbjct 279679 ATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279738 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || || || |||||||| ||||| ||||||||| Sbjct 279739 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCAA 279798 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||| | |||||| ||||| | || || |||||| Sbjct 279799 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 279858 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || |||| || || Sbjct 279859 ATCCAAAAGGAGTCGACTCTACACTTGGT 279887 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || ||||| ||| | ||| | ||||| || | | Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || || || |||||||| ||||| ||||||||| Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||| | |||||| ||||| | || || |||||| Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280086 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || |||| || || Sbjct 280087 ATCCAAAAGGAGTCGACTCTACACTTGGT 280115 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || ||||| ||| | ||| | ||||| || | | Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || || || |||||||| ||||| ||||||||| Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||| | |||||| ||||| | || || |||||| Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280314 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || |||| || || Sbjct 280315 ATCCAAAAGGAGTCGACTCTACACTTGGT 280343 >seq4124 Length=298687 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || ||| | || | || || || | | Sbjct 14732 ATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 14673 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| ||||| || || |||||||| || || ||| Sbjct 14672 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14613 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | ||||| || || |||||||| || ||| || || | || || |||||| Sbjct 14612 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14553 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || |||| Sbjct 14552 ATTCAGAAGGAGTCTACTTTACA 14530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || | | Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||||||||| || || |||||||| || || ||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | ||||| || || |||||||| || ||| || || | || || |||||| Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13641 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || |||| Sbjct 13640 ATTCAGAAGGAGTCAACTTTACA 13618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || | | Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| ||||| || || |||||||| || || ||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | ||||| || || |||||||| || ||| || || | || || |||||| Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || |||| Sbjct 13868 ATTCAGAAGGAGTCAACTTTACA 13846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||| | || || || | | Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| ||||| || || |||||||| || || ||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | ||||| || || |||||||| || ||| || || | || || |||||| Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || |||| Sbjct 14096 ATTCAGAAGGAGTCAACTTTACA 14074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || | | Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| ||||| || || |||||||| || || ||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | ||||| || || |||||||| || ||| || || | || || |||||| Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || |||| Sbjct 14324 ATTCAGAAGGAGTCAACTTTACA 14302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419599868584120