Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21]
25,048 sequences; 402,743,189 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4124 134 3e-26
seq4755 120 7e-22
>seq4124
Length=298687
Score = 134 bits (148), Expect = 3e-26
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| | | ||| || || ||||| || ||||| || |||||
Sbjct 14542 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14601
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| ||| ||||| | || || ||||||||||| ||||||||||||||||| ||
Sbjct 14602 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTC 14661
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || | ||| |||||||| || |||| |||||| |||
Sbjct 14662 TCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACG 14721
Query 288463 AATATCTGCATTATGTTAT 288481
|| ||||||||| ||| ||
Sbjct 14722 AAAATCTGCATTCTGTGAT 14740
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| | | ||| || || ||||| || ||||| || |||||
Sbjct 13858 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 13917
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| ||| ||||| | || || ||||||||||| ||||||||||||||||| ||
Sbjct 13918 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTC 13977
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || | |||||||||||||| |||| ||||| ||
Sbjct 13978 TCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACA 14037
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 14038 AAGATCTGCAT 14048
Score = 122 bits (134), Expect = 2e-22
Identities = 168/234 (72%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299
|||| ||||||| || || | ||| || || || | || || || || || || ||
Sbjct 13588 TACA-GTCCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTA 13646
Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359
||| | | ||| || || ||||| || ||||| || ||||| |||| ||| |||||
Sbjct 13647 GTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTC 13706
Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419
| || || ||||||||||| || |||||||| ||||| || || || | || || |
Sbjct 13707 AGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGG 13766
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | |||||||||||||| |||| ||||| || || ||||||||
Sbjct 13767 CTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| | | ||| || || ||||| || ||||| || |||||
Sbjct 14086 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14145
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| ||| ||||| | || || ||||||||||| ||||||||||||||||| ||
Sbjct 14146 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTC 14205
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || | ||||| |||||||| |||| ||||| ||
Sbjct 14206 TCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACA 14265
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 14266 AAGATCTGCAT 14276
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| | | ||| || || ||||| || ||||| || |||||
Sbjct 14314 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14373
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| ||| ||||| | || || ||||||||||| ||||||||||| ||||| ||
Sbjct 14374 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCCTTCACATTC 14433
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || | |||||||||||||| |||| ||||| ||
Sbjct 14434 TCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACA 14493
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 14494 AAGATCTGCAT 14504
>seq4755
Length=318840
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | | ||||| || || || | || || || || |||
Sbjct 280097 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 280038
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| | ||| |||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct 280037 ATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 279978
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || | || ||||| | || |||||||| || ||||||||||| ||
Sbjct 279977 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACA 279918
Query 288463 AATATCTGCAT 288473
|||||||||||
Sbjct 279917 AATATCTGCAT 279907
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | | ||||| || || || | || || || || |||
Sbjct 280325 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 280266
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| | ||| |||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct 280265 ATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 280206
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || | || ||||| | || |||||||| || ||||||||||| ||
Sbjct 280205 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACA 280146
Query 288463 AATATCTGCAT 288473
|||||||||||
Sbjct 280145 AATATCTGCAT 280135
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | | ||||| || || || | || || || || |||
Sbjct 280553 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 280494
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| | ||| |||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct 280493 ATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 280434
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || | || ||||| | || |||||||| || ||||||||||| ||
Sbjct 280433 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACA 280374
Query 288463 AATATCTGCAT 288473
|||||||||||
Sbjct 280373 AATATCTGCAT 280363
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | | ||||| || || || | || || || || |||
Sbjct 279869 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 279810
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| | ||| |||||| || || || || ||||||||||| || |||||||| ||
Sbjct 279809 ATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 279750
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || | || ||||| | || |||||||| || ||||||||||| ||
Sbjct 279749 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACA 279690
Query 288463 AATATCTGCATT 288474
||||||||||||
Sbjct 279689 AATATCTGCATT 279678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179275816462544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |