Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4124 134 3e-26 seq4755 120 7e-22 >seq4124 Length=298687 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | | ||| || || ||||| || ||||| || ||||| Sbjct 14542 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14601 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || || ||||||||||| ||||||||||||||||| || Sbjct 14602 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTC 14661 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || | ||| |||||||| || |||| |||||| ||| Sbjct 14662 TCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACG 14721 Query 288463 AATATCTGCATTATGTTAT 288481 || ||||||||| ||| || Sbjct 14722 AAAATCTGCATTCTGTGAT 14740 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | | ||| || || ||||| || ||||| || ||||| Sbjct 13858 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 13917 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || || ||||||||||| ||||||||||||||||| || Sbjct 13918 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTC 13977 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || | |||||||||||||| |||| ||||| || Sbjct 13978 TCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACA 14037 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 14038 AAGATCTGCAT 14048 Score = 122 bits (134), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 |||| ||||||| || || | ||| || || || | || || || || || || || Sbjct 13588 TACA-GTCCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTA 13646 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| | | ||| || || ||||| || ||||| || ||||| |||| ||| ||||| Sbjct 13647 GTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTC 13706 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | || || ||||||||||| || |||||||| ||||| || || || | || || | Sbjct 13707 AGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGG 13766 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | |||||||||||||| |||| ||||| || || |||||||| Sbjct 13767 CTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | | ||| || || ||||| || ||||| || ||||| Sbjct 14086 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14145 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || || ||||||||||| ||||||||||||||||| || Sbjct 14146 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTC 14205 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || | ||||| |||||||| |||| ||||| || Sbjct 14206 TCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACA 14265 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 14266 AAGATCTGCAT 14276 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | | ||| || || ||||| || ||||| || ||||| Sbjct 14314 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14373 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || || ||||||||||| ||||||||||| ||||| || Sbjct 14374 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCCTTCACATTC 14433 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || | |||||||||||||| |||| ||||| || Sbjct 14434 TCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACA 14493 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 14494 AAGATCTGCAT 14504 >seq4755 Length=318840 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | ||||| || || || | || || || || ||| Sbjct 280097 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 280038 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| |||||| || ||||| || ||||||||||| || |||||||| || Sbjct 280037 ATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 279978 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | || ||||| | || |||||||| || ||||||||||| || Sbjct 279977 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACA 279918 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 279917 AATATCTGCAT 279907 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | ||||| || || || | || || || || ||| Sbjct 280325 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 280266 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| |||||| || ||||| || ||||||||||| || |||||||| || Sbjct 280265 ATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 280206 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | || ||||| | || |||||||| || ||||||||||| || Sbjct 280205 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACA 280146 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 280145 AATATCTGCAT 280135 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | ||||| || || || | || || || || ||| Sbjct 280553 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 280494 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| |||||| || ||||| || ||||||||||| || |||||||| || Sbjct 280493 ATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 280434 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | || ||||| | || |||||||| || ||||||||||| || Sbjct 280433 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACA 280374 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 280373 AATATCTGCAT 280363 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | ||||| || || || | || || || || ||| Sbjct 279869 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 279810 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| |||||| || || || || ||||||||||| || |||||||| || Sbjct 279809 ATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTC 279750 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | || ||||| | || |||||||| || ||||||||||| || Sbjct 279749 TCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACA 279690 Query 288463 AATATCTGCATT 288474 |||||||||||| Sbjct 279689 AATATCTGCATT 279678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179275816462544