Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_009989.1 Length=27751 Score E Sequences producing significant alignments: (Bits) Value seq16058 161 2e-35 seq15970 100 5e-17 >seq16058 Length=1913 Score = 161 bits (178), Expect = 2e-35 Identities = 461/695 (66%), Gaps = 24/695 (3%) Strand=Plus/Plus Query 16459 ACATCGGGGCTAGGTGGTCTCTAGATGTTATGGATACGGTGAACCCCTTCAACCACCACA 16518 |||| || || ||||||||||| || ||||| | ||||| || || ||||||||| Sbjct 76 ACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCACC 135 Query 16519 GGAACACAGGATTAAAGTACCGCTCGCAGCTTCTAGGCAACGGGCGCCAC-TGCAACTTC 16577 |||| | || || ||||| || |||||| ||||| || || | ||| ||| Sbjct 136 GGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCCT-TTC 194 Query 16578 CACATCCAAGTGCCCCAGAAGTTCTTTGCTATAAAGAATCTGCTCTTGCTGCCCGGCACC 16637 ||||| |||||||| || || ||||||||| | ||||| || || | || || ||| || Sbjct 195 CACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCC 254 Query 16638 TACAACTACGAGTGGTACTTCAGGAAAGACCCTAACATGGTCCTGC--AGTCCACCTTGG 16695 |||| ||| |||||| ||||||| || | ||||||||||||| ||| | |||| | Sbjct 255 TACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTC-CCTT-G 312 Query 16696 GGAACGACTTGAGAGAGGACGGGGCACAAATAACATACAACCAAGTCAACTTGTACGTCA 16755 | || ||| | ||| || || || | |||| | || | ||||| | || | || Sbjct 313 GAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCA 372 Query 16756 GCTTCTTCCCTATGAACTATGACACCCAGAGCGAGCTGGAGTTAATGCTAAGGAATGCAA 16815 ||||||||| ||| | ||||| || || ||||| | || | | Sbjct 373 CCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAGCCATGCTGCGCAACGATA 432 Query 16816 CCAATGACCAGAACTTCAGCGACTACTTGGGTGCTGTGAATAATCTATATCAGATCCCCG 16875 ||||||| ||| |||| ||||||| | ||| | || | || || | ||||| | Sbjct 433 CCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCCCTG 492 Query 16876 C--AGGC-TCCAACACGGTGGTTGTAAACATTCCA-GACAGATCG----TGGGGGGCCTT 16927 | | || |||||| || || ||||| || ||| |||| ||||| Sbjct 493 CCAATGCAACCAACA------TTCCAA--TTTCCATCCCATCTCGCAACTGGGCAGCCTT 544 Query 16928 CAGAGGGTGGAGCTTCACCCGACTCAAGGTCACCGAGACCCCTAGGATAGGAGCTACTCA 16987 ||| || ||| ||||||| ||||||| || ||||| || | ||| | Sbjct 545 CAGGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTT 604 Query 16988 AGATCCCAACTTTGAGTATTCTGGGACCATCCCCTACCTAGATGGCACCTTCTA-CTTAT 17046 |||||| |||| | |||||||| | || |||||||| |||||||| || || |||| Sbjct 605 CGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAA 664 Query 17047 CTCACACCTTTCAGCGGTGTTCTATCCAGTGGGACTCTAGCGTGCCTTGGCCTGGCAACG 17106 | ||||| || || | | || ||| || ||||| || ||||||||||| | Sbjct 665 C-CACACTTTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATG 723 Query 17107 ACAGGCTTTTGGTTCCTAACTGGTTTGAGATAAAG 17141 ||||||| ||| ||| || |||||| || ||| Sbjct 724 ACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAG 758 >seq15970 Length=4606 Score = 100 bits (110), Expect = 5e-17 Identities = 209/308 (68%), Gaps = 10/308 (3%) Strand=Plus/Minus Query 12710 GATAGACATGCTCAACGAAGCAGTAGTGGAAAACTACTTGGAAGTGGGCAGGCAGCACGG 12769 ||| ||| || | ||| | || | | || |||||| ||||| | ||||| ||| | || Sbjct 406 GATCGACCTGATGAACAATGCCATCATTGACAACTACCTGGAAATTGGCAGACAGAATGG 347 Query 12770 GGTAG----AAGTCTCAGACATCGGAGTGAAGTTTGACACCCGCAACTTTAAATTAGGGA 12825 || |||| ||||| || || ||||||||||| | || || | | ||| Sbjct 346 AGTGCTGGAAAGT----GACATTGGTGTTAAGTTTGACACTAGAAATTTCAGGCTCGGGT 291 Query 12826 GAGACCCCGTAACTACCCTTGTCACTCCCGGAGCTTACACACACAAAGCATTTCACCCTG 12885 | ||||||| ||||| | | | || |||| ||||| | | ||||| || |||| Sbjct 290 GGGACCCCGAAACTAAGTTGATTATGCCAGGAGTCTACACTTATGAGGCATTCCATCCTG 231 Query 12886 ACGTTGTTTTGCTGCCGGGCTGTGGAGTGGACTTTACCAACTCCAGAATCAGCAACATGC 12945 || |||| |||||||| || || || || |||||||| | | || | |||||| ||| Sbjct 230 ACATTGTATTGCTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGACTTAGCAACTTGC 171 Query 12946 TTGGAATAAGAAAGAGGGCCCCTTACGAGCCAGGATTCACTATTCTGTATGACGA-CTTG 13004 |||| || || ||||| || | | || || |||| || ||||||| || |||| Sbjct 170 TTGGCATCAGGAAGAGACATCCATTCCAGGAGGGTTTCAAAATCATGTATGAAGATCTTG 111 Query 13005 CAAGGGGG 13012 ||||||| Sbjct 110 -AAGGGGG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 88659115329936