Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4755 109 5e-19 seq4124 98.7 1e-15 >seq4755 Length=318840 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || |||| | ||||||||||| ||||||||||| | Sbjct 279905 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 279846 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || ||||| | | |||||| ||| ||||| || ||||| Sbjct 279845 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 279786 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || ||| | | || | ||||| | | ||| || Sbjct 279785 ATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 279726 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 || | || | ||| |||||||||||||| |||||||| |||||||| || Sbjct 279725 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATTGC 279676 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || |||| | ||||||||||| ||||||||||| | Sbjct 280133 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280074 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || ||||| | | |||||| ||| ||||| || ||||| Sbjct 280073 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280014 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || ||| | | || | ||||| | | ||| || Sbjct 280013 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 279954 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| |||||||||||||| || ||||| |||||||| Sbjct 279953 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || |||| | ||||||||||| ||||||||||| | Sbjct 280361 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280302 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || ||||| | | |||||| ||| ||||| || ||||| Sbjct 280301 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280242 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || ||| | | || | ||||| | | ||| || Sbjct 280241 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280182 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| |||||||||||||| || ||||| |||||||| Sbjct 280181 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || || ||||| | || || || || || | | ||||||||||| ||||||||||| Sbjct 280592 CAACCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCA 280533 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || ||| || ||||| || || ||||| | | |||||| ||| ||||| || ||| Sbjct 280532 GACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGA 280473 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || || || ||| || ||| | | || | ||||| | | ||| Sbjct 280472 GGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCA 280413 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | ||| |||||||||||||| || ||||| |||||||| Sbjct 280412 ACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 >seq4124 Length=298687 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | |||| | |||||||| |||||||||||||| Sbjct 14506 CCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAT 14565 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||||| | | || | ||| |||||||| ||||| Sbjct 14566 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14625 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || |||||| ||| | | || | ||||| | | ||| ||| Sbjct 14626 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14685 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| ||| || || ||||||||||| Sbjct 14686 TCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCAT 14732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | |||| |||||||||| |||||||||||||| Sbjct 13822 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13881 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||||| | | || | ||| |||||||| ||||| Sbjct 13882 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13941 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || |||||| ||| | | || | ||||| | | ||| ||| Sbjct 13942 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14001 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || |||| || || ||||| |||||||| Sbjct 14002 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | |||| |||||||||| |||||||||||||| Sbjct 13594 CCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13653 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||||| | | || | ||| |||||||| ||||| Sbjct 13654 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13713 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||| | || | | || | ||||| | | ||| || Sbjct 13714 ATACCTTCTTTATC-TTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAAC 13772 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || |||| || || ||||| |||||||| Sbjct 13773 CTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | |||| |||||||||| |||||||||||||| Sbjct 14050 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14109 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||||| | | || | ||| |||||||| ||||| Sbjct 14110 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14169 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || |||||| ||| | | || | ||||| | | ||| ||| Sbjct 14170 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14229 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| || || ||||| |||||||| Sbjct 14230 TCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | |||| |||||||||| |||||||||||||| Sbjct 14278 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14337 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||||| | | || | ||| |||||||| ||||| Sbjct 14338 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14397 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || |||||| || | | || | ||||| | | ||| ||| Sbjct 14398 ATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14457 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || |||| || || ||||| |||||||| Sbjct 14458 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496107020242560