Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3788 82.4 5e-11 >seq3788 Length=444899 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 90628 TTTCCTAAATCGCCAACGTGTCG--TTCAATGGCATTTGGTGCGCCGTGATCGCGTCCGG 90685 ||||| | || ||||| ||||| | | || ||||||| || ||||| || | | Sbjct 442663 TTTCCCAGGTCACCAACATGTCGAATGCTAT--CATTTGGAGCTCCGTGCTCTTGATTAG 442606 Query 90686 TGGGATTAAAATGTTCGCCCGCAGATGTGCAACCGTTAGTTGTGTCACCAAATTCGTGCA 90745 | ||||||||||| | || || || ||||| ||||| ||||| ||||||||||| || | Sbjct 442605 TTGGATTAAAATGGGCTCCGGCTGAAGTGCATCCGTTTGTTGTATCACCAAATTCATGAA 442546 Query 90746 CATGAAAACCGTG 90758 |||| ||||| || Sbjct 442545 CATGGAAACCATG 442533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357282898050680