Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_012584.1 Length=30570 Score E Sequences producing significant alignments: (Bits) Value seq16058 426 3e-115 seq15970 98.7 2e-16 >seq16058 Length=1913 Score = 426 bits (472), Expect = 3e-115 Identities = 636/889 (72%), Gaps = 10/889 (1%) Strand=Plus/Plus Query 17597 CTGGTGGAAACGTATGTGAACATGGGAGGCAGATGGTCGGTTGACTTCATGGATACTGTG 17656 ||||| || | || | ||||| || | ||| ||||| ||||| ||||| | |||| Sbjct 57 CTGGTCGATTCATACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTG 116 Query 17657 AATCCCTTTAATCACCACCGCAACGATGGCTTAAAGTACCGCTCACAGGTTCTTGGCAAT 17716 ||||| ||||| |||||||| || | |||| || ||||| || | |||| |||||| Sbjct 117 AATCCATTTAACCACCACCGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAAT 176 Query 17717 GGCAGATACGTAGACTTTC-ACATTCAAGTGCCTCAGAAGTTCTTTGCAATCAAAAATTT 17775 ||| | || || | ||||| |||| ||||||||||| || |||||||| |||| || | Sbjct 177 GGCCGTTATGT-GCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCT 235 Query 17776 GCTGCTACTGCCTGGAAGTTACACTTACGAGTGGAGTTTCAGGAAGGATGTGAACATGGT 17835 || || || ||||| ||||| || ||||||| ||||| |||| |||||||||||| Sbjct 236 ACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGT 295 Query 17836 TCTTCAGAGCACCCTAGGAAATGATCTGCGGGCGGATGGAGCTTCCCTGGAAATTCAC-A 17894 || || || |||| |||||||| || | | ||||| ||| | | | ||||| | Sbjct 296 CCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACATA-AGTTTCACCA 354 Query 17895 GTGTAAATCTGTATGCTAGTTTCTTTCCCATGGCACATAACACTGCTTCCACGCTTGAAG 17954 | | || || ||||| | ||||| |||||||| || ||||| ||||| || ||||||| Sbjct 355 GCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAG 414 Query 17955 CAATGCTGCGAAATGAAACCAACGACCAAACTTTCCTAGAGTACTTAAGCAGC-GCTACT 18013 | |||||||| || || ||||| || || | ||| || ||| | | || |||| Sbjct 415 CCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACCTCT-CTGCAGCTAAC 473 Query 18014 ATGATGTTCCCTATTCCAGCGGG-GCAAACACAAATTCCTGTCAGCATTCCTGCTCGGAA 18072 ||| | | ||| || || || |||| || | ||||| | ||| || |||| || Sbjct 474 ATGCTTTACCCCATCCCTGCCAATGCAACCA-ACATTCCAATTTCCATCCCATCTCGCAA 532 Query 18073 CTGGGCTGCTTTCAGAGGGTGGAGCTTCACCCGCCTTAAA-CAAAGTGAAACTCCCAACA 18131 |||||| || ||||| || ||| ||||||| | || ||| | ||| || ||||| Sbjct 533 CTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCAAG-GAGACTCCATCTC 591 Query 18132 TTGGGTCTCCTTTTGATCCTTACTTTACCTACAGCGGAAGCATTCCATTTTTGGATGCCA 18191 |||| || || ||||| ||||| || ||| ||||| | |||||| || Sbjct 592 TTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCA 651 Query 18192 CTTTCTATCTCACCCACACCTTTCAGCGTGTCTCCATCATGTTTGATTCTTCTGTCAGCT 18251 |||| || || | |||||| || || | ||||||||||||||| || || ||||||| Sbjct 652 CTTTTTACCTTAACCACACTTTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCT 711 Query 18252 GGCCTGGAAATGATCGTTTGCTGACCCCAAATGAATTTGAGATAAAACGAAATATTGATG 18311 ||||||| ||||| | || || | |||||||| ||||| || || || | | | |||| Sbjct 712 GGCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTGGATG 771 Query 18312 GAGAAGGGTTGTGTGTGGCTCAAAGCAACATGACCAAGGACTGGTTTCTGGTGCAGATGC 18371 | ||||| | |||||| ||| ||||||||||||| |||||||| ||||| ||||||| Sbjct 772 GGGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGC 831 Query 18372 TAGCAAATTATAACATTGGCTACCAGGGCTATCATCTTCCTGACAACAACAAAGACAGAA 18431 | || || || ||||||||||||||||||| | | | ||||| |||| || | | Sbjct 832 TTGCCAACTACAACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCGCA 891 Query 18432 CCTACTCCTTCTTACGCAACTTTGAACCTATGACCCGACAAGTGGTAGA 18480 |||||||| || | ||||| | ||||||| | | || ||||| || Sbjct 892 TGTACTCCTTTTTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGGTTGA 940 >seq15970 Length=4606 Score = 98.7 bits (108), Expect = 2e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 10937 GCCATTTTGGAGGCTGTGTTGCCCTCCCGTTCGGATCCTACACATGAGAAGGTTTTAGCG 10996 ||||| ||||||| || |||||||||| || | || || || |||||||| | || Sbjct 1659 GCCATACTGGAGGCCGTAGTGCCCTCCCGCTCCAACCCCACCCACGAGAAGGTCCTGGCT 1600 Query 10997 ATAGTTAATGCCTTAGTGCAAACCAAAGCTGTGAGAGCTGATGAGGGCGGAGCGATTTAT 11056 || || || || | ||| | | ||| || | | | ||||||| ||| | | || Sbjct 1599 ATCGTGAACGCGCTGGTGGAGAACAAGGCCATCCGTCCCGATGAGGCCGGGCTGGTATAC 1540 Query 11057 GATGCCCTGTTGCAACGAGTGGGACGCTACAACAGCAGCAACGTGCAAACTAATCTAGAC 11116 |||| || ||| | || |||| || ||||||||||||||||||||||| || || ||| Sbjct 1539 AATGCTCTCTTGGAGCGCGTGGCCCGTTACAACAGCAGCAACGTGCAAACCAACCTGGAC 1480 Query 11117 AGATTAGTTCAGGATGTGAGGGAGGCAGT 11145 || | || |||||| | ||||| || Sbjct 1479 AGGATGGTGACCGATGTGCGCGAGGCCGT 1451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97673338909632