Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3731 102 7e-17 seq4124 93.3 4e-14 >seq3731 Length=1156867 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||| || || ||||| | || || ||||| || ||||||| | ||| |||| | Sbjct 1054732 AGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGT 1054673 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | || | ||||| || || || || || || ||||||||||| ||| Sbjct 1054672 TGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGATT 1054613 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || || | ||||| | || || | || ||| ||||| || || | ||||| || Sbjct 1054612 TTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCC 1054553 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||| ||||| Sbjct 1054552 GTAAGTGTTTTCACAAAAATCTGCAT 1054527 >seq4124 Length=298687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| ||||| || ||| ||||||| ||||| ||||| || ||||| |||||||| Sbjct 14577 ATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 14636 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| ||||| ||| | || | ||||| || ||| || || | |||| Sbjct 14637 ATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAAT 14696 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | ||| || || ||||| ||||| Sbjct 14697 CGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCAT 14732 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 ||||| ||||| || || || || || | | ||| | | ||| ||||| ||||| || Sbjct 13624 GTTGACTCCTTCTGAATGTTGTAGTCAGATAACG-TACGACCATCTTCCAACTGTTTACC 13682 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| ||||||| ||||| ||||| || ||||| |||||||||||||||||||| Sbjct 13683 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTT 13736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 ||||| ||||| || || || || || | | ||| | | ||| ||||| ||||| || Sbjct 13852 GTTGACTCCTTCTGAATGTTGTAGTCAGATAACG-TACGACCATCTTCCAACTGTTTACC 13910 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 45262 ||| ||||||| ||||| ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 13911 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTT 13970 Query 45263 GATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 | || | ||||| || ||| || || | || | ||| || || || | || Sbjct 13971 CACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGT 14030 Query 45323 TTTTACAAAAATTTGCAT 45340 || ||||| || ||||| Sbjct 14031 CTTCACAAAGATCTGCAT 14048 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 ||||| ||||| || || || || || | | ||| | | ||| ||||| ||||| || Sbjct 14080 GTTGACTCCTTCTGAATGTTGTAGTCAGATAACG-TACGACCATCTTCCAACTGTTTACC 14138 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| ||||||| ||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 14139 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTT 14192 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 ||||| ||||| || || || || || | | ||| | | ||| ||||| ||||| || Sbjct 14308 GTTGACTCCTTCTGAATGTTGTAGTCAGATAACG-TACGACCATCTTCCAACTGTTTACC 14366 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| ||||||| ||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 14367 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTT 14420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451861677798080