Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4755 152 1e-31 seq4124 127 5e-24 seq11996 93.3 1e-13 >seq4755 Length=318840 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| | || | ||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 280584 TCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 280525 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| || || ||||| | ||| || || || ||| |||||| Sbjct 280524 GCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCC 280465 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||||| || | ||||| ||| || || ||||| Sbjct 280464 CTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAA 280405 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || ||||| |||||||| || || Sbjct 280404 AGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTG 280366 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 280127 CGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTG 280068 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| | ||| || || || ||| |||||| Sbjct 280067 CGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCC 280008 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| || | ||||| ||| || || ||||| Sbjct 280007 TCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAA 279948 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || ||||| |||||||| || || Sbjct 279947 GTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTG 279910 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 280355 CGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTG 280296 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| | ||| || || || ||| |||||| Sbjct 280295 CGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCC 280236 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| || | ||||| ||| || || ||||| Sbjct 280235 TCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAA 280176 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || ||||| |||||||| || || Sbjct 280175 GTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTG 280138 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 279899 CGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTG 279840 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| | ||| || || || ||| ||| || Sbjct 279839 CGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCC 279780 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| || | ||||| ||| || || ||||| Sbjct 279779 TCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAA 279720 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || ||||| || ||||| || || Sbjct 279719 GTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTG 279682 >seq4124 Length=298687 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| | ||| |||||||| || | ||||||||||| || || Sbjct 13600 CGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTA 13659 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||| || || ||||| || | ||| || ||||| ||| ||| ||| Sbjct 13660 CGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCT 13719 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||| || |||||| || | ||||| | | || || ||||| Sbjct 13720 TCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAAT 13779 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| | || |||||||| || || Sbjct 13780 GTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTG 13817 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| | ||| |||||||| || | ||||||||||| || || | |||||| Sbjct 13837 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 13896 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 13897 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 13956 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || ||||| || | ||||| | | || || ||||| |||||||| Sbjct 13957 TGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGT 14015 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| | || |||||||| || || Sbjct 14016 CTTCCCCGTCAATGTCTTCACAAAGATCTG 14045 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| | ||| |||||||| || | ||||||||||| || || | |||||| Sbjct 14293 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14352 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 14353 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14412 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || |||||| || | ||||| | | || || ||||| ||||||||| Sbjct 14413 TGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTC 14472 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || |||||||| || || Sbjct 14473 TTCCCCGTCAATGTCTTCACAAAGATCTG 14501 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| | ||| |||||||| || | ||||||||||| || || | |||||| Sbjct 14521 AGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14580 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 14581 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14640 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || ||||| || | ||||| | | || || |||||||| ||||| Sbjct 14641 TGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGT 14699 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| | ||| || || ||||| || Sbjct 14700 CTTTCCCGTCAAAGTCTTAACGAAAATCTG 14729 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| | ||| |||||||| || | ||||||||||| || || | |||||| Sbjct 14065 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14124 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 14125 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14184 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || ||||| || | ||||| | | || || ||||| ||||| || Sbjct 14185 TGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGT 14243 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| | || |||||||| || || Sbjct 14244 CTTCCCCGTCAATGTCTTCACAAAGATCTG 14273 >seq11996 Length=10337 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/218 (71%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| | ||| |||||||| || ||||||||||| || || | ||||||||| Sbjct 10336 ACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTCC 10277 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||| | || ||||| || | ||| || ||||| ||| ||| |||||| || ||| Sbjct 10276 AACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGA 10217 Query 199541 ATCTTTTGC-TTCACGGATTCGACGGTGT-CTGTTGTTTCTACATCCAACGTGATCGTCT 199598 || ||| || ||||| || | |||| | | | || || ||||| ||||| | || Sbjct 10216 AT-TTTCGCTTTCACATTCTCAATCGTGTGCACTAGGCTCAACCTCCAATGTGATTGGCT 10158 Query 199599 TACCCGTGAGAGT-TTTCACAAAAATTTGGTACATTTT 199635 | |||| | || |||||||| ||||| |||||| Sbjct 10157 TCCCCGGCAATGTGCTTCACAAAGATTTG---CATTTT 10123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178543251638216