Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5310 122 9e-23 seq4755 95.1 1e-14 >seq5310 Length=161011 Score = 122 bits (134), Expect = 9e-23 Identities = 403/616 (65%), Gaps = 8/616 (1%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 ||||| |||| | ||||| ||||| ||||| || || ||||| || || | || Sbjct 62962 TGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCA 63021 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 || || || | ||| || ||||| || || || || || ||||||||||| || ||||| Sbjct 63022 TTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAG 63081 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT- 133058 ||||| || || || || || || || || || || || |||| ||| || | ||||| Sbjct 63082 CTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAACGTA 63141 Query 133059 GGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCAT 133118 | ||| | | ||||| || ||||||| || |||| || || | | Sbjct 63142 GACTTAGAATC-ACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTA- 63199 Query 133119 CGTTTC-GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGA 133177 ||| | || || || || | | | | | |||| ||| | || || |||| Sbjct 63200 GGTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGA 63259 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 | || || |||||||| || || | ||||| || || || || | || ||||| | Sbjct 63260 TTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCCATAAAAAC 63319 Query 133238 ACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGA 133297 | || |||| | ||| || |||||| || || || | | ||||| || | Sbjct 63320 AGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTA 63379 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 | || || || || || || || |||| ||| | || ||||| || || | | Sbjct 63380 TTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACGTTCCCCAACCT 63439 Query 133358 TCAAGCG-CTCCCAGTCGCGCG-TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAA 133415 | ||| | |||||| | | | | ||| ||||||| |||||||| || || ||||| || Sbjct 63440 T-AAGTGACTCCCAAT-GTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAA 63497 Query 133416 CGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCAC 133475 || ||| | || |||||||| | | ||| || || ||||| |||||| |||| || Sbjct 63498 AGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGGGAAAAGAAC 63557 Query 133476 AAACCGGCGGGGGTTT 133491 ||| ||| | |||||| Sbjct 63558 AAAACGGTGTGGGTTT 63573 >seq4755 Length=318840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| ||||| || || || || || || || || | || || ||| | | Sbjct 279678 AATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG 279737 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| || |||| || || ||||| ||||| |||| || Sbjct 279738 TGACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCA 279797 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || |||||||| || | ||||| | |||||||| Sbjct 279798 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAA 279857 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| |||| || || |||||||| ||| Sbjct 279858 CATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGT 279894 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || || || || || || | || || ||| | | Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || ||||||||||| |||| ||| Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || |||||||| || | ||||| | ||||||||| Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280086 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || |||||||| ||| Sbjct 280087 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGT 280122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || || || || || || | || || ||| | | Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || ||||||||||| |||| ||| Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || |||||||| || | ||||| | ||||||||| Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280314 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || |||||||| ||| Sbjct 280315 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGT 280350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || || || || || || | || || ||| | | Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || ||||||||||| |||| ||| Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || |||||||| || | ||||| | ||||||||| Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280542 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 ||||||||||| |||| ||||| |||||| Sbjct 280543 ATCCAAAAGGAGTCGACTCTGCACTTGGTG 280572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500016195896320