Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_014564.2 Length=45413 Score E Sequences producing significant alignments: (Bits) Value seq16058 208 2e-49 >seq16058 Length=1913 Score = 208 bits (230), Expect = 2e-49 Identities = 534/806 (66%), Gaps = 24/806 (3%) Strand=Plus/Plus Query 21495 CACCAACGTGGGCGCCCGCTGGTCCGTCGACCAGATGGACACCGTCAACCCCTTCAACCA 21554 || |||| | |||||| | ||||| | |||| ||||||| || || || || ||||| Sbjct 71 CATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCA 130 Query 21555 CCACCGCAACTGGGGGCTCAAG-TACCGCTCGCAGCTGCTGGGCAACAGCCGCTACACCA 21613 |||||| || || ||| | | ||||| || ||| |||||||| |||| || Sbjct 131 CCACCGGAA-TGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGC 189 Query 21614 AGTTCCACATCCAGGTGCCCCAAAAGTTCTTCGCCATCAAGAACCTGCTGCTCCTGCCCG 21673 |||||||| || ||||| ||||| ||||| || |||||||||| || || || || | Sbjct 190 CTTTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTG 249 Query 21674 GCACCTACACCTACGAGTGGGTCTTCCGCAAGGACCCCAACATGATCCTGCAGTCCACGC 21733 || |||||||||| |||||| |||| | |||| |||||| ||||||| | | Sbjct 250 GCTCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCC 309 Query 21734 TCGGCAACGACCTGCGCGCCGACGGCGCCTCCATCGTCTACTCCGAGATCAACCTGATGG 21793 | || || ||||| | | || || || ||| | | || |||||||| | Sbjct 310 TTGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATG 369 Query 21794 CCAACTTCATGCCCATGGACCACAACACCAGCAACCA-GCTCGAGCTGATGATGCGCAAC 21852 ||| |||| | ||||||| ||||||||| || | | || || ||| |||||||| Sbjct 370 CCACCTTCTTCCCCATGGCTCACAACACC-GCTTCAACTCTTGAAGCCATGCTGCGCAAC 428 Query 21853 GCCACCAACGACCAGACCTTCGCCGACTACCTCGGCTCCA-AGAACGCCCTGTACAGCGT 21911 | ||||| || ||| | ||| |||||||||| || || ||| || ||| | | Sbjct 429 GATACCAATGATCAGTCATTCAACGACTACCTC-TCTGCAGCTAACATGCTTTACCCCAT 487 Query 21912 GCCCGCCGGCTCCACCGGCCTGACCATCAACATCCCCGCCCGCACCTGGGAGGGCATGCG 21971 || ||| | ||| | | | || |||||| | |||| ||||| | | | | Sbjct 488 CCCTGCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAG 547 Query 21972 CGGCTGGTCCTTCACGCGGCTGAAGGCCAGCGAGACGCCCGCCATCGGCGCCCAGTACGA 22031 |||||||||||||| | || || ||| ||||| || | | || | || ||| Sbjct 548 GGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGA 607 Query 22032 CGTCGGCTTCCGCTACTCGGGCTCCATCCCCTACGAGGACGGCACCTTCTACCTCACGCA 22091 | |||| || || || || || |||||| ||| ||||| || ||||| | || Sbjct 608 TCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCA 667 Query 22092 CACCTTC------CGCTCCATGAGCGTCCTCTTCGACACCTCCATCAACTGGCCCGGCAA 22145 ||| ||| |||||| || | || ||| |||| ||| |||||| ||||| Sbjct 668 CACTTTCAAGAAGGGCTCCA------TCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAA 721 Query 22146 CGACCGGCTGCTCACCCCCAACATGTTCGAGATCAAGCGGTCCGTGGCCAACGACGCCGA 22205 ||| ||||| | | || || ||| || |||||||| | ||| || | || Sbjct 722 TGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTG------GATGGGGA 775 Query 22206 GGGCTTCACCATGTCGCAGTGCGACATCACCAAGGACTGGTGGCTGGTGCAGATGGCCAC 22265 || | || || | || ||| |||| ||||| ||||||| ||||| |||||| | Sbjct 776 AGGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGC 835 Query 22266 CAACTACAACTACGTCTACAACGGCT 22291 |||||||||| | |||| | |||| Sbjct 836 CAACTACAACATTGGCTACCAGGGCT 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145156810986000