Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3765 210 9e-49 seq3731 141 4e-28 seq4294 140 1e-27 seq4755 125 3e-23 seq4124 107 8e-18 seq8745 98.7 4e-15 >seq3765 Length=693835 Score = 210 bits (232), Expect = 9e-49 Identities = 428/628 (68%), Gaps = 12/628 (2%) Strand=Plus/Plus Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTT--TA 451031 || |||||||| || |||||||| || ||| ||| ||||||| || | || Sbjct 99371 GTTGAAATTATTGCCAATGACCAGGGTAATAGAATTACCCCTTCATATGTTGCATCACTA 99430 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATGCCAAAA 451091 |||| ||| | || | || | ||||| ||| | ||| ||||| | ||| Sbjct 99431 CGGAAGGTGAACGGCTGATTGGAGATGCTGCCAAAAACCAGCTAACATCAAACCCTGAAA 99490 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 | ||||| | ||||| ||| | | || || | | || ||| || ||||| || Sbjct 99491 ATACAGTTTTTGATGTCAAAAGACTTATCGGAAGGACGTTTGACGAATCGACTGTTCAGG 99550 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGA-AAGCCCTATATTCAA 451210 | || | ||| |||| | | | ||| || || ||||||| | || || ||| || || Sbjct 99551 AGGATATAAAGCACTTTCCATTTTCTGTCGTTAA-CAAAAAGAACAAACCATATGTTGAA 99609 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || || | | ||| |||| | ||||| || || ||||| || | |||||| | Sbjct 99610 GTTCATGTTGGATCAGAAGTTAAATCGTTTGCACCAGAGGAAATCTCTGCAATGGTTTTG 99669 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 |||||||| | || ||| |||| ||||| || || |||||||| | Sbjct 99670 GGAAAAATGAAGAGCAGTGCTGAAGCATATCTTGGTAAGAAGGTAACGCATGCAGTAGTC 99729 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC-AGGACATAT 451389 ||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||| || Sbjct 99730 ACTGTCCCAGCTTATTTCAACGATGCGCAGCGTCAGGCAACAAAAGATGCTGGGACA-AT 99788 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||||| |||| |||||||| ||||| ||||| || || |||||| | || ||||| Sbjct 99789 AGCTGGTTTAGATGTACTTCGAATCATTAACGAACCAACCGCTGCTGCTATTGCTTATGG 99848 Query 451450 ACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 |||| || ||||| | | || || |||||| | || |||||| ||||||| || Sbjct 99849 CCTAG----ATAAAAAGGA--TGGTGAGAAGAATATTCTGGTTTTTGATCTTGGTGGTGG 99902 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 ||| || ||| |||| | ||||| |||| |||||||| ||| || || || Sbjct 99903 TACTTTCGACGTTTCGTTACTCACTATTGAGAATGGAGTATTTGAGGTAGTCGCTACAAA 99962 Query 451570 TGGTGATACTCATCTAGGAGGTGAAGAT 451597 |||||| || ||||| ||||| |||||| Sbjct 99963 TGGTGACACACATCTTGGAGGAGAAGAT 99990 >seq3731 Length=1156867 Score = 141 bits (156), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||||| || || |||||||| || ||||| ||||| | || Sbjct 1054527 ATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCTGCT 1054586 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||||| |||| ||||| |||||||| || || || || || |||||| Sbjct 1054587 GATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGATCAA 1054646 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || |||||||| |||||||||||||| | | || ||||| Sbjct 1054647 CAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTATAAC 1054706 Query 391230 ATTGA-TAAGGATGCAACACTTCA 391252 || | |||| || | |||||||| Sbjct 1054707 ATACAGTAAGAAT-CTACACTTCA 1054729 >seq4294 Length=102949 Score = 140 bits (154), Expect = 1e-27 Identities = 338/506 (67%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| || |||||||| || ||||| || |||||||| | ||| Sbjct 75925 AATCCAGATGAAGCTGTGGCTTATGGTGCGGCTGTTCAGGCGGCTATTCTGAGTGGT--- 75981 Query 452051 GATGA---TGAAAAATT--AGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTG 452105 ||| | |||| | | |||| || |||||| | ||||| | || | || || | Sbjct 75982 GATAAGTCTGAAGATGTGAAGGACTTA--CTGTTACTTGATGTGGCTCCATTGTCACTAG 76039 Query 452106 GAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTT 452165 | |||| |||||||| || ||||||| || ||||| || || | || ||| Sbjct 76040 GTCTTGAGACAGCTGGGGGTGTGATGACGGCGTTGATTAAGCGGAATACAACGATCCCTA 76099 Query 452166 GTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAG 452225 || | | |||||| || | || || ||||| || |||||| |||||| | Sbjct 76100 CGAAGCATACTCAAACGTTCACGACTTACTCAGACAACCAGCCTGGTGTACTTATTCAGG 76159 Query 452226 TGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTT 452285 ||||||| || |||||| | ||||| ||| || ||| || || | || || | Sbjct 76160 TGTTTGAGGGTGAACGTACGATGACGAAAGACAACAATCTGCTGGGCAAGTTCGAGCTGT 76219 Query 452286 CAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATG 452345 || ||||| ||| || | || |||||| || || | || | ||| | |||| Sbjct 76220 CAGGTATTCCACCTGCTCCTCGTGGTGTTCCTCAGATCGAGGTGACGTTTGACATAGATG 76279 Query 452346 CAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATT 452404 | ||||||||||| ||||| ||| ||||| || | |||| || |||| || || Sbjct 76280 CGAATGGTATTCTGAATGTATCTGCTGTTGACAAGGCTACTGG-TAAGGAGAACAAGATA 76338 Query 452405 ACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAA 452464 ||||| || ||||| || |||||||| ||||| || || || ||| | |||| Sbjct 76339 ACAATCACAAATGACAAGGGTCGTTTATCGAAAGAGGAAATAGATCGTATGATTAATGAG 76398 Query 452465 GCAGAAAAATTCAAGGATGATGATGA 452490 || || | || |||| ||| ||||| Sbjct 76399 GCGGATAGATACAAGTCTGAGGATGA 76424 >seq4755 Length=318840 Score = 125 bits (138), Expect = 3e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||||||| || |||||| | || ||||| || | Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| || || || |||||||| ||||||||||| |||||| Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| || | || || || || || ||||| | |||||| | || || || Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280542 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||||| || ||| |||| |||| Sbjct 280543 ATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGG 280586 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||||||| || |||||| | || ||||| || | Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| || || || |||||||| ||||||||||| |||||| Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| || | || || || || || ||||| | |||||| | || || || Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280086 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 280087 ATCCAAAAGGAGTCGACTCTACACTTGGT 280115 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||||||| || |||||| | || ||||| || | Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| || || || |||||||| ||||||||||| |||||| Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| || | || || || || || ||||| | |||||| | || || || Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280314 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 280315 ATCCAAAAGGAGTCGACTCTACACTTGGT 280343 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||||||||| || |||||| | || ||||| || Sbjct 279678 AATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG 279737 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||| | | ||| || || || |||||||| || |||||||| ||||| Sbjct 279738 TGACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCA 279797 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||||||||| || | || || || || || ||||| | |||||| | || || || Sbjct 279798 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAA 279857 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 279858 CATCCAAAAGGAGTCGACTCTACACTTGGT 279887 >seq4124 Length=298687 Score = 107 bits (118), Expect = 8e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || |||| || || || ||||| | || ||||| | Sbjct 14733 AATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 14674 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||| | | ||| ||||| |||||||| ||||| ||||||||||| || Sbjct 14673 TGACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCA 14614 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || ||||| | |||||||| | || || | || || || Sbjct 14613 ACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAA 14554 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 14553 CATTCAGAAGGA 14542 Score = 95.1 bits (104), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| |||| || || || || || | || ||||| | | Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || |||||||||||||| ||||| ||||||||||| ||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || ||||| | |||||||| | || || | || || || Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13641 Query 391230 ATTGATAAGGATGCAAC 391246 ||| | ||||| |||| Sbjct 13640 ATTCAGAAGGAGTCAAC 13624 Score = 95.1 bits (104), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| |||| || || || || || | || ||||| | | Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || ||||| | |||||||| | || || | || || || Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869 Query 391230 ATTGATAAGGATGCAAC 391246 ||| | ||||| |||| Sbjct 13868 ATTCAGAAGGAGTCAAC 13852 Score = 95.1 bits (104), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| |||| || || || || || | || ||||| | | Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || ||||| | |||||||| | || || | || || || Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097 Query 391230 ATTGATAAGGATGCAAC 391246 ||| | ||||| |||| Sbjct 14096 ATTCAGAAGGAGTCAAC 14080 Score = 89.7 bits (98), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| |||| || || || || || | || ||||| | | Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||||| |||||||| ||||| ||||||||||| ||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || ||||| | |||||||| | || || | || || || Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325 Query 391230 ATTGATAAGGATGCAAC 391246 ||| | ||||| |||| Sbjct 14324 ATTCAGAAGGAGTCAAC 14308 >seq8745 Length=35083 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAG-ATATGCCTTTCACAT 248545 ||||||||||||||| ||| ||| || || || | ||||| ||||||| ||||||| Sbjct 21352 ACATGGACAAAAAGGTACATGTGGAAT-ACGTTATCGTCAAGAGGATATGCCGTTCACAT 21294 Query 248546 CAGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTA 248605 ||||| || || |||||| | ||| | |||||||||| ||| || | |||||||||| Sbjct 21293 GTGAAGGAATTACACCAGATATTATTATTAATCCACATGCTATTCCAAGTCGTATGACTA 21234 Query 248606 TGGGACAATTA 248616 | ||||| ||| Sbjct 21233 TCGGACATTTA 21223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975084337633184