Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3765 190 2e-42 seq4294 158 9e-33 >seq3765 Length=693835 Score = 190 bits (210), Expect = 2e-42 Identities = 393/575 (68%), Gaps = 31/575 (5%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || |||||||| | |||||||| || | |||| | || || | ||||||| || Sbjct 99905 GTACCACCACCAAGATCAAAAACCAGAATATTCTTCTCACCATCCT---TTTTATCTAGG 99849 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||| |||||||| ||||| |||| | |||| | |||||| Sbjct 99848 CCATAAGCAATAGCAGCAGCGGTTGGTTCGTTAATGATTCGAAGTACATCTAAACCAGCT 99789 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || |||||||| || || || | || | |||||| ||||| || || ||||| Sbjct 99788 ATTGTCCCAGCATCTTTTGTTGCCTGACGCTGCGCATCGTTGAAATAAGCTGGGACAGTG 99729 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | || |||| ||||| | ||||||| ||| || || | |||||||| | Sbjct 99728 ACTACTGCATGCGTTACCTTCTTACCAAGATATGCTTCAGCACTGCTCTTCATTTTTCCC 99669 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA--TTTTGAT-----A 518409 |||| ||||| || |||| ||||| | | | |||| | || |||| | Sbjct 99668 AAAACCATTGCAGAGATTTCCTCTGGTGCAAAC------GATTTAACTTCTGATCCAACA 99615 Query 518410 TGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCAT 518469 ||| ||||||| ||||||||| || |||| || |||||| ||| || || Sbjct 99614 TGA-ACTTCAACATATGGTTTGTTCTTTTTGTTAACGACAGAAAATGGAAAGTGCTTTAT 99556 Query 518470 ATCTGATTGAACACT---TTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 518526 ||| |||||| | || |||| || || || || || | || ||| ||||||| Sbjct 99555 ATCCTCCTGAACAGTCGATTCGTCA--AACGTC-CTTCCGATAAGTCTTTTGACATCAAA 99499 Query 518527 AATAGTATTGGTT---GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 || ||||| || || || || |||| | | |||||| |||||||||||||| | Sbjct 99498 AACTGTATT--TTCAGGGTTTGATGTTAGCTGGTT-TTTGGCAGCATCTCCAATCAGCCG 99442 Query 518584 TTCTGTCTCTGTAA--ATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 ||| || ||| ||| ||||||||| || || | | |||||| || ||||| ||| Sbjct 99441 TTCACCTTCCGTAGTGATGCAACATATGAAGGGGTAATTCTATTACCCTGGTCATTGGCA 99382 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTAC 518676 ||||||||||| ||| || |||||||||| Sbjct 99381 ATAATTTCAACGCGACCTCCGTGATATACACCTAC 99347 >seq4294 Length=102949 Score = 158 bits (174), Expect = 9e-33 Identities = 343/511 (67%), Gaps = 2/511 (0%) Strand=Plus/Minus Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 |||||||| |||||||| |||||||||||||| || |||||||| || || ||||| Sbjct 80832 TCATTAATTATTCTCAACACATTAAGACCAGCTATCGCACCTGCATCCTTCGTCGCTTGA 80773 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCA 518323 | ||| |||||| || || |||||||| || ||||| || ||||| || | || Sbjct 80772 CGTTGACTATCGTTGAAGTAAGCAGGAACCGTTATAACTGCGTCAGTCACCGACCTCCCC 80713 Query 518324 ATATAAG-CGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | |||| ||| ||| | ||||| || | ||| |||||||| | ||||| Sbjct 80712 AAATAACTCGCA-GCCACCTCCTTCATCGCGACCAACACCATAGATGAAATCTCCTCTGG 80654 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | | ||| ||| | || ||| ||| | || || | |||||| || Sbjct 80653 AAAGAACGACTTCTCCTCACCCTTGTACTCAACTACAATCTTAGGCTTCTCACCAACCTT 80594 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 || ||||| |||||||| | |||||||| || || | |||| || | Sbjct 80593 AACCACTTTGAATGGCCAATGCTTCATATCACTCTGCACTGATGCATCATCGAATCGACG 80534 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 ||| || | || || || ||||| | || || ||||| ||| | || |||| | || Sbjct 80533 ACCGATCAGCCGCTTCGCGTCAAACACTGTGTTCGTTGGGTTAGTCGCCACTTGGTTCTT 80474 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 |||||||| |||| |||| | || | ||||| || | ||||| || || || || Sbjct 80473 CGCTGCATCACCAACCAGACGCTCAGCGTCTGTGAACGCTACATAACTCGGCGTCGTACG 80414 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || || || || || ||||| || ||||||||||||| || ||||||| ||||| Sbjct 80413 GTTTCCCTGGTCGTTAGCAATTATCTCAACTTTACCATGCTGGAATACACCGACACACGA 80354 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | | || || || | |||||| ||||||||| Sbjct 80353 ATATGTCGTACCAAGATCAATTCCAATAGCA 80323 Score = 125 bits (138), Expect = 5e-23 Identities = 269/398 (68%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| ||||| ||||||||||| ||||| | ||||| || || || || Sbjct 76313 TTGTCAACAGCAGATACATTCAGAATACCATTCGCATCTATGTCAAACGTCACCTCGATC 76254 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | |||||||||| || ||| || | || | ||||| ||| Sbjct 76253 TGAGGAACACCACGAGGAGCAGGTGGAATACCTGACAGCTCGAACTTGCCCAGCAGATTG 76194 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || ||||| || | | ||||||||||| || | || ||| || ||| || || Sbjct 76193 TTGTCTTTCGTCATCGTACGTTCACCCTCAAACACCTGAATAAGTACACCAGGCTGGTTG 76134 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 517487 ||||| ||||| || | || | || | | || ||| || ||||| || | | || Sbjct 76133 TCTGAGTAAGTCGTGA--ACGTTTGAGTATGCTTCGTAGGGATCGTTGTATTCCGCTTAA 76076 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | ||||| | ||| || ||||| || | ||| || || | |||| ||||||| Sbjct 76075 TCAACGCCGTCATCACACCCCCAGCTGTCTCAAGACCTAGTGACAATGGAGCCACATCAA 76016 Query 517548 CTAGGACAATA--TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAAT 517605 || ||| || | | | | |||| | | |||| |||||||| || |||| Sbjct 76015 GTA--ACAGTAAGTCCTTCACATCTTCAGACTTATCACCACTCAGAATAGCCGCCTGAAC 75958 Query 517606 AGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG 517643 ||| |||||||| || ||||||||||| ||||||| || Sbjct 75957 AGCCGCACCATAAGCCACAGCTTCATCTGGATTAATAG 75920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779579435731888