Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3765 167 3e-36 seq4294 114 2e-20 seq5310 86.0 8e-12 >seq3765 Length=693835 Score = 167 bits (184), Expect = 3e-36 Identities = 430/643 (67%), Gaps = 23/643 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || || | ||||| || || || || || ||||| | || Sbjct 99995 TCGAAATCTTCTCCTCCAAGATGTGTGTCACCATTTGTAGCGACTACCTCAAATACTCCA 99936 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | |||||||| || || ||||||||||| || ||||||| || | Sbjct 99935 TTCTCAATAGTGAGTAACGAAACGTCGAAAGTACCACCACCAAGATCAAAAACCAGAATA 99876 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | || || ||||| || || || || ||||| || || |||||||| Sbjct 99875 TTCTTCTCACCATC---CTTTTTATCTAGGCCATAAGCAATAGCAGCAGCGGTTGGTTCG 99819 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || ||||| ||| | | ||||| || || | |||||||| || || || || Sbjct 99818 TTAATGATTCGAAGTACA-TCTAAACCAGCTATTGTCCCAGCATCTTTTGTTGCCTGACG 99760 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||| |||||| || || || ||||| || || || || | ||| || |||||||| || Sbjct 99759 CTGCGCATCGTTGAAATAAGCTGGGACAGTGACTACTGCATGCGTTACCTTCTTACCAAG 99700 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| | ||| || | |||||||| | |||||| | || || || || | || Sbjct 99699 ATATGCTTCAGCACTGCTCTTCATTTTTCCCAAAACCATTGCAGAGATTTCCTCTGGTGC 99640 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCAT-GGGTTTATCCGCAGCACCGG 7874 |||| ||| ||| || || |||||||| ||| ||||| | | | Sbjct 99639 AAACGATTTAACTTCTGATCCAACATGAACTTCAA-CATATGGTTTGTTC---TTTTTGT 99584 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCG-AAAACTTT 7933 | || | | | | | || ||||| || | || | || | | || |||| | Sbjct 99583 TAACGACAGAAAATGGAAAGTGCTTTATATCCTCCT-GAACAGTCGATTCGTCAAACGTC 99525 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGG 7990 ||||||||||| | || ||||||||||||| |||| |||| | | |||| ||| Sbjct 99524 CTTCCGATAAGTCTTTTGACATCAAAAACTGTATTTTCAGGGT---TTGATGTTAGCTGG 99468 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTA--AACGCGACGTACGATG 8048 || || || || || || || || ||||| | ||||||| | || || || || | Sbjct 99467 TTTTTGGCAGCATCTCCAATCAGCCGTTC---ACCTTCCGTAGTGATGCAACATATGAAG 99411 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 |||| ||| ||| || ||||| || ||||||||||| ||||| Sbjct 99410 GGGTAATTCTATTACCCTGGTCATTGGCAATAATTTCAACGCG 99368 >seq4294 Length=102949 Score = 114 bits (126), Expect = 2e-20 Identities = 342/520 (66%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 |||||||| || | || ||| || || ||||| || | | ||||| ||||||||||| Sbjct 80832 TCATTAATTATTCTCAACACA-TTAAGACCAGCTATCGCACCTGCATCCTTCGTCGCTTG 80774 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| |||||| ||||| || || ||||||| || ||||| || || | | || Sbjct 80773 ACGTTGACTATCGTTGAAGTAAGCAGGAACCGTTATAACTGCGTCAGTCACCGACCTCCC 80714 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 | ||| | || | || ||||| | | ||||| ||||||||||| || | Sbjct 80713 CAAATAACTCGCAGCCACCTCCTTCATCGCGACCAACACCATAGATGAAATCTCCTCTGG 80654 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 ||| ||| ||||| || | |||||| ||||| | || || || || ||| Sbjct 80653 AAAGAACGACTTCTCCTCACCCTTGTACTCAACTACAATCTTAGGCTTCTCACCA--ACC 80596 Query 7873 GGGGATAACC---TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGAAA 7928 ||||| || | | ||||| |||||||| || || || || || | Sbjct 80595 T----TAACCACTTTGAATGGCCAATGCTTCATATCACTCTGCAC-TGATGCATCATCGA 80541 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 | | ||||| || ||||| || ||||| |||||||| | ||||| | || || Sbjct 80540 ATCGACGACCGATCAGCCGCTTCGCGTCAAACACTGTGTTCGTTGGGTTAGTCGCCACTT 80481 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 |||||||||| || || || | ||||| || | || || ||||| || || | Sbjct 80480 GGTTCTTCGCTGCATCACCAACCAGACGCTC---AGCGTCTGTGAACGCTACATAACTCG 80424 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | ||||| || || || |||||||| ||||| || || || | | || | || | Sbjct 80423 GCGTCGTACGGTTTCCCTGGTCGTTAGCAATTATCTCAACTTTACCATGCTGGAATACAC 80364 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| |||||||| || || || | |||||| || || || Sbjct 80363 CGACACACGAATATGTCGTACCAAGATCAATTCCAATAGC 80324 Score = 107 bits (118), Expect = 2e-18 Identities = 337/521 (65%), Gaps = 6/521 (1%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| ||||| ||| || || | ||||| || | | ||| || || || ||||| Sbjct 76428 CTTCTCATCCTCAGACTTGTATCTATCCGCCTCATTAATCATACGATCTATTTCCTCTTT 76369 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 |||||| | ||||| ||||| || || || ||||| | ||||| | ||||| || Sbjct 76368 CGATAAACGACCCTTGTCATTTGTGATTGTTATCTTGTTCTCCTTACCAGTAGCCTTGTC 76309 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 ||||| |||||||| ||||||||| ||||| | || ||| | || | || || || Sbjct 76308 AACAGCAGATACATTCAGAATACCATTCGCATCTATGTCAAACGTCACCTCGATCTGAGG 76249 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 ||| | || || | ||||||||| | | || || | || || | | |||| || Sbjct 76248 AACACCACGAGGAGCAGGTGGAATACCTGACAGCTCGAACTTGCCCAGCAGATTGTTGTC 76189 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 ||| | || |||||||||| ||| | || | ||| || |||| || || ||| Sbjct 76188 TTTCGTCATCGTACGTTCACCCTCAAACACCTGAATAAGTACACCAGGCTGGTTGTCTGA 76129 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | ||| |||| | ||| | || ||||| ||||| | | ||| | || Sbjct 76128 GTAAGTCGTGAACGTTTGAGTATGCTTCGTAGGGATCGTTGTATTCCGCTTAATCAACGC 76069 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | ||| || || || || || || |||| || | ||| || ||||| Sbjct 76068 CGTCATCACACCCCCAGCTGTCTCAAGACCTAGTGACAATGGAGCCACATC---AAGTAA 76012 Query 6985 CAG---GTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||| ||| | ||| ||| | ||||| | | || || || || || | ||| Sbjct 76011 CAGTAAGTCCTTCACATCTTCAGACTTATCACCACTCAGAATAGCCGCCTGAACAGCCGC 75952 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCA 7082 || || || || || ||||| || ||||| | || |||| Sbjct 75951 ACCATAAGCCACAGCTTCATCTGGATTAATAGACTTGTTCA 75911 >seq5310 Length=161011 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| ||||| || ||||||||||||||||| || ||||| || | |||||||| ||||| Sbjct 62657 ATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTCCAT 62716 Query 115122 AAAATCAAAGGGATT 115136 ||||||||| ||||| Sbjct 62717 AAAATCAAAAGGATT 62731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634933939920320