Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_014899.1 Length=35203 Score E Sequences producing significant alignments: (Bits) Value seq16058 484 1e-132 seq10679 365 1e-96 seq15970 233 4e-57 >seq16058 Length=1913 Score = 484 bits (536), Expect = 1e-132 Identities = 668/926 (72%), Gaps = 14/926 (2%) Strand=Plus/Plus Query 20422 CACCTACGATTACATGAACGCCCGGCTGGTG--CCCAGCGGACTCATCGACGCCTACATC 20479 |||||| || |||||||||| || |||| |||| | || |||| | |||||| Sbjct 17 CACCTATGAGTACATGAACGGGCGAGTGGTTTCCCCATCT--CTGGTCGATTCATACATC 74 Query 20480 AACATGGGCGCGCGCTGGAGCGTCGACTCCATGGATAACGAAAACCCCTTCAACCACCAC 20539 ||||| ||||| | ||| | ||| | ||||| || | || || || ||||||||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 20540 CGGAACGCCGGGCTCCGGTACCGCTCCCAGCTGCTGGGCAACGGCCGCTACGTCGACTTC 20599 ||||| || || || || ||||| ||| ||| |||||||| ||||| || || ||| Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCCTTTC 194 Query 20600 CACATCCAAGTGCCGATGAAGTTCTTCGCCATCAAGAACCTCATGCTGTTGCCCGGCACC 20659 ||||| |||||||| || ||||| || |||||||||| | || | || ||| || Sbjct 195 CACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCC 254 Query 20660 TACACCTACGAGTGGGCTTTCAGGAAGGACGTCAACATGATCCTCCAGAGCACTCTGGGC 20719 |||||||| |||||| ||||| |||| || |||||| |||| || || | || || Sbjct 255 TACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGGA 314 Query 20720 AACGATCTGCGTGTCGACGGCGCCTCCATCAACTACACCCAGATCAATCTCTTCGCCTCC 20779 || || || | || || || ||| | | |||| ||||| |||| ||| || Sbjct 315 AATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCACC 374 Query 20780 TTCTTTCCCCTGGCCCACAACACCGCCTCCACCCTGGAAGCCATGCTGAGAAACGAGACC 20839 ||||| ||| |||| ||||||||||| || || || |||||||||||| | ||||| ||| Sbjct 375 TTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAGCCATGCTGCGCAACGATACC 434 Query 20840 AACGACCAGGTCTTCGCCGACTACCTCAGCAGC-GCTAACATGCTCTACCCCATCCCCGC 20898 || || ||| ||| |||||||||| | || ||||||||||| ||||||||||| || Sbjct 435 AATGATCAGTCATTCAACGACTACCTC-TCTGCAGCTAACATGCTTTACCCCATCCCTGC 493 Query 20899 CGGGGCCACCAACGTGCCCATCAGCATTCCGTCCCGCAACTGGGCCGCCTTCCGAGGCTG 20958 | || |||||| | || || ||| || || ||||||||||| |||||| | ||||| Sbjct 494 CAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGCTG 553 Query 20959 GTCCTTTACCCGAGTCAAGGCCCTGGAAACGCCCTCCCTGGGTTCCGTTTACGATCCCTA 21018 |||||| ||| || |||| || ||| || || || || || || | | ||||||||| Sbjct 554 GTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGATCCCTA 613 Query 21019 CTTTGTCTACTCCGGCACCATCCCTTATCTCGACGGCACCTTCTACCTCAACCACACTTT 21078 ||| || || || || | || || || || || ||||| || ||||| ||||||||||| Sbjct 614 CTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCACACTTT 673 Query 21079 CCGTCGAGTGG--CCATCCAGTTCGATTCCAGCGTCAGCTGGCCGGGCATGGATCGCCTG 21136 | || || ||||| ||| || ||| ||||||||||| |||| || | ||| Sbjct 674 C--AAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTG 731 Query 21137 CTGGTGCCTAACGAGTTCGAGATCAAGCGGGCCCTGGACGGCGAAGGCTACACCACCTG- 21195 || || || ||||| || |||||||| | |||| || ||||| |||| | || Sbjct 732 TTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTGGATGGGGAAGGATACA--ATGTGG 789 Query 21196 -TCAGTGTAACATCACCAAGGACTGGTTCCTGGTCCAGATGCTGGCCAACTACAACATCG 21254 || || ||||| ||||| |||||||||||||| |||||||| |||||||||||||| | Sbjct 790 CCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAACTACAACATTG 849 Query 21255 GCTACCAGGGGTACTGGATTCCCGATGGGCCTCGGGACCGCACCTACAGCTTCTTCCGCA 21314 |||||||||| | | || || || || ||| |||| ||| ||| ||| | | Sbjct 850 GCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCGCATGTACTCCTTTTTCAGAA 909 Query 21315 ACTTCCAACCCATGACTCGGCAGATG 21340 ||||||| || |||| ||||| || Sbjct 910 ACTTCCAGCCTATGAGCAGGCAGGTG 935 >seq10679 Length=1604 Score = 365 bits (404), Expect = 1e-96 Identities = 694/1014 (68%), Gaps = 21/1014 (2%) Strand=Plus/Minus Query 25018 GGAGAGCATCCACTACCTCTTTAGGCAAGGCTATGTCAGGCAGGCCTGCGACGTCTCCGG 25077 ||||| | | |||||| |||||| || |||| || ||||||| ||| | ||||| Sbjct 1362 GGAGAACCTGCACTACACCTTTAGACATGGCTTCGTGCGGCAGGCATGCAAGATCTCCAA 1303 Query 25078 GGTGGATCTGACCAACATCGTCACCTACATGGGACTTATGCACGAGAACCGGGTCGGGCA 25137 ||||| || |||||| | || | |||||||| || |||| ||||||||| | ||||| Sbjct 1302 CGTGGAGCTTACCAACCTGGTTTCTTACATGGGCATTTTGCATGAGAACCGGCTAGGGCA 1243 Query 25138 GAGCGTGTTACACCAAACCCTGCGCGGCGAGGCGCGTCGCGACTACGTCCGTGACACCAT 25197 |||||| | ||| ||||| || ||||| || || |||||| |||| ||| | Sbjct 1242 GAGCGTCCTGCACACCACCCTTAAAGGGGAGGCCCGCCGTGACTACATCCGAGACTGTGT 1183 Query 25198 ATACTTGCTGCTGGTCTACACCTGGCAGACCGCCATGGGGGCCTGGCAGCAGTGTCTGGA 25257 ||| | || | | ||||||||||| | |||||| | ||||| |||||| |||| Sbjct 1182 CTACCTCTACCTCTGCCATACCTGGCAGACTGGCATGGGTGTGTGGCAACAGTGTTTGGA 1123 Query 25258 CGAGGCCAATCTCGGCGAACTGGCCAAGATTCTG-AGACGGCGC-CGACGCGACCTGTGG 25315 ||| || || || |||| |||| | || ||| | | | | || ||||||| Sbjct 1122 AGAGCAGAACCTAAAAGAGCTGGACAAGCTCTTGCAGAGATCCCTCAAAGC--CCTGTGG 1065 Query 25316 ACGGGCTTCGACGAGCGCACCGTCGCTCAAGAGCTCAGCGAGATCATCTTCCCGCCGCGC 25375 || || || || |||||||||||||| || || || ||||||||||| ||| Sbjct 1064 ACAGGTTTTGATGAGCGCACCGTCGCCTCGGACCTGGCAGACATCATCTTCCCCGAGCGT 1005 Query 25376 CTGGTGGAGGCGCTCGGCGCCGGCCTCCCCGACCTTCTGAACCAGAGCCTGCTGCATAAC 25435 || || | || | |||||| || ||| || ||| ||||||| |||| | ||| Sbjct 1004 CTCAGGGTTACTCTGCGAAACGGCCTGCCAGACTTTATGAGCCAGAGCATGCTTAACAAC 945 Query 25436 TTCCGCAGCTTCATCCTCGAACGGTCCGGGGTCCTGCCCGCCGCCGCCAATCTTTATCCT 25495 || ||| |||||||| ||||| ||||| ||||||| ||| || | | || Sbjct 944 TTTCGCTCTTTCATCCTGGAACGCTCCGGTATCCTGCCTGCCACCTGCTGTGCGCTGCCC 885 Query 25496 TCCGACCTCGTTCCCGTTGACTACCGCGAGAGCCCACCAACCCTGTGGTGCCACGTCTAT 25555 |||||| | || || | |||||||||| ||||||| | || ||| ||||| ||| Sbjct 884 TCCGACTTTGTGCCTCTCACCTACCGCGAGTGCCCACCGCCGCTATGGAGCCACTGCTAC 825 Query 25556 CTCCTCCGCCTGGCCAACTACCTCATGTACCACAACGACGTCGCGGTCGACAGTAGCGGA 25615 || |||||||||||||||||||| |||||| || || | || |||||| Sbjct 824 CTGTTCCGCCTGGCCAACTACCTCTCCTACCACTCGGATGTTATAGAGGATGTGAGCGGA 765 Query 25616 CCGGGACAG-CTGCTGGCCTGTCACTGTCGCTGCAATCTCTGCTCGCCCCACCGCTCACT 25674 ||| | ||||||| || ||||| ||||||||||| ||| | ||||||||||| || Sbjct 764 ----GACGGTCTGCTGGAATGCCACTGCCGCTGCAATCTTTGCACACCCCACCGCTCCCT 709 Query 25675 CGCCCTCAACACGCCCCTGCTCAACGAGGTCCAGTGCATCGGGACCTTCGAGCTCCAGGG 25734 ||| |||| | | |||| | |||| |||| |||||| ||||||||| | ||||| Sbjct 708 TGCCTGCAACCCCCAGTTGCTGAGCGAGACCCAGATCATCGGCACCTTCGAGTTGCAGGG 649 Query 25735 CGCGCCCGGCGAAGACGGCCAGCC--CACCGGGCCCG-GCTTGAAACTCACGCCGGCCCT 25791 | | | |||| || | | | ||||| | | | ||||||| || |||| || Sbjct 648 TCCCAGCAGTGAAGGCGAGGGGTCTTCTCCGGGGCAGAGTCTGAAACTGACACCGGGGCT 589 Query 25792 GTGGACCAACGCCTACCTCCGCAAGTTCGAAGAGGCCGATTACGAGCACGACCGCATCGC 25851 ||||||| ||||||||| |||||||| | | |||||| | | | | ||| Sbjct 588 GTGGACCTCCGCCTACCTGCGCAAGTTTCATCCCGAGGATTACCACCCCTATGAGATCAG 529 Query 25852 CTTCTTTGAAGAGCGACCGCCGGCGCGTCAAGCTCCCCGGGCCGAGCTCACCGCCTGCGT 25911 |||| ||| || | | | | || ||||| | ||||||| | |||||||| Sbjct 528 GTTCTATGAGGA------CCAGTCACATC---CTCCCAAAGTCGAGCTCTCAGCCTGCGT 478 Query 25912 CATCACCGCCCCGGCCATCGTCGCCCAGTTGCAAGCCATCTCCCAAGCCCGCCGCGAATT 25971 ||||||| || || | ||||| |||||||||||| || |||||| ||||| Sbjct 477 CATCACCCAGGGAGCAATTCTGGCCCAATTGCAAGCCATCCAAAAATCCCGCCAAGAATT 418 Query 25972 CTTGTTGAAAAAGGGCAGCGGGGTGTATCTCGACCCGAAGACGGGCGAAGAGCT 26025 | |||||||||| |||||||| || || ||||| |||| || || ||||| Sbjct 417 TCTACTGAAAAAGGGAAGCGGGGTCTACCTTGACCCCCAGACCGGTGAGGAGCT 364 >seq15970 Length=4606 Score = 233 bits (258), Expect = 4e-57 Identities = 239/308 (78%), Gaps = 3/308 (1%) Strand=Plus/Minus Query 14579 CCGTTCGTCCCGCCGCGCTACCGGACGCCGACCGAAGGAAGGAATAGCAT-CGTGTACAG 14637 || ||||| || ||||| |||| | |||| || ||||| || | ||||| ||| ||| Sbjct 859 CCCTTCGTACCCCCGCGGTACCTGGCGCCTACGGAAGGGAGACACAGCATTCGT-TACTC 801 Query 14638 CCAGCTGCCGCCCCTCTACGACACGACCCGGCTCTATCTGGTGGATAACAAGTCG-GCGG 14696 ||||| ||||||| ||||| || ||| | | |||||||| || ||||||||| |||| Sbjct 800 GGAGCTGTCGCCCCTGTACGATACCACCAAGTTGTATCTGGTTGACAACAAGTCGCGCGG 741 Query 14697 ACATCGAGTCTCTGAACTATCAGAGCGACCACAGCGATTTCGTGACGAGCGTGGTGCAGA 14756 |||||| || ||||||||||||| |||||||||| | ||| |||| | |||||||||| Sbjct 740 ACATCGCCTCCCTGAACTATCAGAACGACCACAGCAACTTCCTGACCACGGTGGTGCAGA 681 Query 14757 ACGGCGACTTTACGCCCCAGGAGGCCGCCACCCAAACCATCAACTTGGACGATCGGTCGC 14816 || |||||||| ||| |||||| |||||| ||||||||||| ||||| ||||||| Sbjct 680 ACAATGACTTTACCCCCACGGAGGCTAGCACCCAGACCATCAACTTTGACGAACGGTCGC 621 Query 14817 GCTGGGGCGGCGAGCTGAAAACCGTCCTGCACACGTGTCTGCCCAACATCAACGGCTACC 14876 | |||||||| | ||||| ||| || ||||||| |||||||| | |||| ||| Sbjct 620 GATGGGGCGGTCATCTGAAGACCATCATGCACACCAACATGCCCAACGTGAACGAGTACA 561 Query 14877 TGTACAGC 14884 ||| |||| Sbjct 560 TGTTCAGC 553 Score = 136 bits (150), Expect = 9e-28 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 12849 CCATCCTGGAGGCGGTGGTGCCTTCGCGTCAGGACCCGACTCACGAAAAAGTCTTGGCGT 12908 |||| |||||||| || ||||| || || |||| || ||||| || ||| |||| Sbjct 1658 CCATACTGGAGGCCGTAGTGCCCTCCCGCTCCAACCCCACCCACGAGAAGGTCCTGGCTA 1599 Query 12909 TGGTGAACGCGCTGGTGGACAACGGGGCGGTGCGCCCCGAGGAGGCCGGTCAGATTTACG 12968 | ||||||||||||||||| ||| ||| | || ||||| |||||||| | | | ||| Sbjct 1598 TCGTGAACGCGCTGGTGGAGAACAAGGCCATCCGTCCCGATGAGGCCGGGCTGGTATACA 1539 Query 12969 ACGCGCTGCTGCAGCGCGTGTCCCGTTACAACAGCACCAACGTGCAGTTGAATCTGGACC 13028 | || || || |||||||| ||||||||||||||| ||||||||| || |||||| Sbjct 1538 ATGCTCTCTTGGAGCGCGTGGCCCGTTACAACAGCAGCAACGTGCAAACCAACCTGGACA 1479 Query 13029 GCATGGTG 13036 | |||||| Sbjct 1478 GGATGGTG 1471 Score = 105 bits (116), Expect = 2e-18 Identities = 370/573 (65%), Gaps = 5/573 (1%) Strand=Plus/Minus Query 11792 GCGGCGGACTTGGCCACGGCTTACCAGCAGACGGTGCGGCAGGAGCGGAGCTTCCAGCAG 11851 ||||| || | | | | || ||| ||||||| ||| | ||||||| | |||||| | Sbjct 2598 GCGGCCAACCTAGTCTCAGCCTACGAGCAGACCGTGAAGGAGGAGCGCAACTTCCAAAAA 2539 Query 11852 ACGTTTAAC-CATACGCTGCGGACTCTGCTGGCCCGGGAGGAGACGCGCGTCGGGCTGAT 11910 | |||||| | | | |||| || ||| | ||||| ||||| | | | || ||||| Sbjct 2538 TCTTTTAACACCCATG-TGCGCACCCTGATCGCCCGCGAGGAAGTGACCCTGGGTCTGAT 2480 Query 11911 GCACCTGTGGGACTTTGCCCAAGCGCTGCGCGACAACCCGCAGAGTCGGGCGCTGACGGC 11970 ||| ||||||||| | | || | | | ||||| || | ||||| || Sbjct 2479 GCATCTGTGGGACCTGATGGAGGCTATCACCCAGAACCCCACTAGCAAACCACTGACAGC 2420 Query 11971 CCAGTTGTTTTTGATCACGCAACACTGCCGCGACGAGGGCGTCTTTCGCGAGGCCTTGCT 12030 ||| ||||| || | ||||| || | ||| | | | || | ||||| ||| | Sbjct 2419 TCAGCTGTTTCTGGTGGTTCAACATAGCAGGGACAACGAGGCATTCAGGGAGGCGTTGTT 2360 Query 12031 GGGTCTGGCGGAGCCCGAGAGCCGCTGGCTCTTCGACCTGCTCGACATCCTCCAGAGCAT 12090 | | | ||||| || | | ||||| | || ||| || ||||||| || || || Sbjct 2359 GAACATCACCGAGCCTGATGGGAGATGGCTGTATGATCTGATCAACATCCTGCAAAGTAT 2300 Query 12091 CGTGGTCCAGGAGCAGCGGCTGACGACGGAGGAGCGGGTGGCGGCCATCAACTACGCCGT 12150 | || ||||| | | ||| || ||| ||||| || ||||||||| | || Sbjct 2299 TATAGTGCAGGAACGTAGCCTGGGTTTGGCTGAGAAAGTGGCAGCTATCAACTACTCGGT 2240 Query 12151 CCTGACCCTGGGCAAGTTTTACGCGCGTCGGGTGTACCGTACGCGGTTCGTGCCGCTCGA 12210 | ||| ||||||||| | ||||| || | | ||| || | | ||| || | || Sbjct 2239 CTTGAGCCTGGGCAAATACTACGCTCGCAAGATCTACAAGACCCCCTACGTACCCATAGA 2180 Query 12211 CAAGGAGGTGAAGGTGGACACTTTTTACATGCGGATGGTGCTCAAAGCGCTGGTGCTGAG 12270 |||||||| ||| | || ||||||||||| ||| || || | |||| ||||| Sbjct 2179 TAAGGAGGTAAAGATAGATGGGTTTTACATGCGCATGACTCTGAAGGTGCTGACTCTGAG 2120 Query 12271 CGAGGAGCTGGGCGCGTACCGCAACGCGCGGCTGGAGCGACAGGTGGGCGGCGGCCGAGA 12330 ||| || ||||| | ||| ||||| | || || | || |||| ||| | || | || Sbjct 2119 CGACGATCTGGGGGTGTATCGCAATGACAGGATGCACCGCGCGGTGAGCGCCAGCAG-GA 2061 Query 12331 CCGTCGCGAGATGACGGACGCGGAGCTGATGCA 12363 | |||||| ||| ||| || || ||||| Sbjct 2060 --GGCGCGAGCTGAGCGACAGAGAACTTATGCA 2030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112494529109040