Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_014969.1 Length=44055 Score E Sequences producing significant alignments: (Bits) Value seq16058 179 1e-40 >seq16058 Length=1913 Score = 179 bits (198), Expect = 1e-40 Identities = 522/788 (66%), Gaps = 28/788 (4%) Strand=Plus/Plus Query 22003 CAACATCGGGGCCAGATGGTCCGTCGACCAGATGGACAACGTCAACCCCTTCAACCACCA 22062 |||||| || ||||| ||||| | |||| |||||||| || || || || |||||||| Sbjct 74 CAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCA 133 Query 22063 CCGCAATTGGGGGCTGAAGTACCGCTCTCAACTGCTCGGAAACAGCCGATA-CTGCCGTT 22121 ||| ||| || || ||||| || || || || || |||| || |||| || Sbjct 134 CCGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCC-TT 192 Query 22122 TCCACATTCAGGTGCCTCAGAAATACTTTGCCATCAAGAATCTGCTCCTGCTGCCCGGCA 22181 ||||||| || |||||||| |||| |||||| ||||||| || || || || || ||| Sbjct 193 TCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCT 252 Query 22182 CCTACACGTACGAGTGGGTGCTCAGAAAGGATCCTAACATGATCCTGC--AGTCCAGTCT 22239 ||||||| || |||||| ||||||||| | |||||| |||||| ||| | || Sbjct 253 CCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTC--CCT 310 Query 22240 CGGGAACGACCTGCGCGCCGACGGCGCCTCTAT-CGTCTATTCGGAAGTGAACCTGATGG 22298 || || ||||| | | || || || || || | | | | | ||||| | Sbjct 311 TGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCA-TCAACCTCTATG 369 Query 22299 CCAATTTCATGCCCATGGACCACAACACCAGCAATCAGCTC--GAGCTGATGCTGAGGAA 22356 ||| ||| | ||||||| ||||||||| || ||| ||| || |||||| | || Sbjct 370 CCACCTTCTTCCCCATGGCTCACAACACC-GC-TTCAACTCTTGAAGCCATGCTGCGCAA 427 Query 22357 CGCCACCAACGACCAGACGTTCGCGGACTATCTGGGCGCGAAGAACGCGCTCTACCAGGT 22416 || ||||| || ||| | ||| ||||| || || ||| ||| |||| | Sbjct 428 CGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCAT 487 Query 22417 GCCCGCCGGCTCCACCGCCCTCACCATTAACATCCCCGCCAGAACCTGGGAGGGAATGAG 22476 || ||| | ||| | | | ||| |||||| | | | ||||| | | || Sbjct 488 CCCTGCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAG 547 Query 22477 AGGATGGTCCTTCACTCGGGTGAAAGCGTCCGAGACGCCGCAGATCGGCGCTCA--GTAC 22534 || ||||||||||| | | ||| | ||||| | || || | ||| || | Sbjct 548 GGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTC--CATCTCTTGGATCAGGGTTC 605 Query 22535 GACATCAACTTCAAGTACTCGGGCTCTATCCCCTACTCGGACGGTACCTTTTACCTGACC 22594 || | ||||| || || || ||||| |||||| ||| || || |||||||| | | Sbjct 606 GATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAAC 665 Query 22595 CACACGTTCCGCAACATGAG---CGTGCTTTTCGACACGTCCATCAACTGGCCTGGCAAC 22651 ||||| || ||| | | | | | | || ||| | || ||| |||||||||||| Sbjct 666 CACACTTT---CAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAAT 722 Query 22652 GACCGGCTGCTGGCCCCCAACCTGTTCGAAATCAAGCGCAACGTCGGTATCGACTCAGAG 22711 ||| ||||| || | || || ||| ||||||||||||| || | || | || Sbjct 723 GACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGT--GGATGG----GGAA 776 Query 22712 GGCTTCACGATGTCGCAGTGCGACATCACCAAGGACTGGTATTTGATTCAGATGGCCACC 22771 || | || || | || ||| |||| ||||| ||||||| || |||||||| || Sbjct 777 GGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCC 836 Query 22772 AACTACAA 22779 |||||||| Sbjct 837 AACTACAA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140812503562992