Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_015323.1 Length=45667 Score E Sequences producing significant alignments: (Bits) Value seq16058 125 2e-24 >seq16058 Length=1913 Score = 125 bits (138), Expect = 2e-24 Identities = 302/454 (67%), Gaps = 20/454 (4%) Strand=Plus/Plus Query 21731 CACCTACGAGTACATGAACAAGCGCGT-----CCCCCTCACCAACGTCGTCGACATGTTC 21785 |||||| |||||||||||| ||| || |||| || | | ||||| | | Sbjct 17 CACCTATGAGTACATGAACGGGCGAGTGGTTTCCCCATCTC-----TGGTCGATTCATAC 71 Query 21786 ACGAACGTGGGTGCGCGTTGGTCCATCGACCAGATGGACAACGTCAACCCCTTCAACCAC 21845 | ||| | || || | ||||| | |||| |||||||| || || || || |||||| Sbjct 72 ATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCAC 131 Query 21846 CACAGAAACTGGGGGCTGAAATACCGCTCCCAGCTGCTGGGAAACAGCCGCTACGTCAAC 21905 ||| | || || || ||||| ||| ||| ||||| || |||| || || Sbjct 132 CACCGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCCT 191 Query 21906 TTCCACATCCAAGTGCCCCAAAAATTCTTCGCCATCAAAAACCTGCTGCTGCTCTCCGGC 21965 |||||||| |||||||| ||||||||||| || |||| ||||| || || || | ||| Sbjct 192 TTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGC 251 Query 21966 TCGTACACCTACGAGTGGGTGCTGCGCAAAGACCCCAACATGATCCTACAA---TCCAGT 22022 || |||||||| |||||| | | || | |||||| |||| ||| ||| Sbjct 252 TCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCC--- 308 Query 22023 CTGGGCAACGACCTGCGCGCCGACGGCGCCAGCATCGTCTACAACGAGGTGAACCTCATG 22082 || || || ||||| | | || || || | ||| | || | | |||||| Sbjct 309 CTTGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTAT 368 Query 22083 GCCAACTTCATGCCCATGGATCACAACACCAGT--AACCAGCTCGAGCTGATGCTGAGAA 22140 |||| |||| | ||||||| |||||||||| | ||| || || |||||| | | Sbjct 369 GCCACCTTCTTCCCCATGGCTCACAACACCGCTTCAAC--TCTTGAAGCCATGCTGCGCA 426 Query 22141 ACGCCACCAACGATCAGACCTTTGTGGACTACCT 22174 ||| ||||| |||||| | || |||||||| Sbjct 427 ACGATACCAATGATCAGTCATTCAACGACTACCT 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145969369222704