Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4124 147 5e-30 seq4755 123 6e-23 seq11996 111 3e-19 >seq4124 Length=298687 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| | ||| ||||| || ||||| ||||| || | | || | |||||||| Sbjct 14523 AACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTC 14582 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 14583 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 14642 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || |||||||| ||||| | || || || | |||| |||||| Sbjct 14643 GATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTT 14702 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || ||||| | |||||| Sbjct 14703 TCCCGTCAAAGTCTTAACGAAAATCTGCATT 14733 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| | ||| ||||| || ||||| ||||| || | | || | |||||||| Sbjct 13611 AACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTC 13670 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 13671 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 13730 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| || |||||||| ||||| | || || || | || | |||||| Sbjct 13731 AATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTT 13790 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 13791 CCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| | ||| ||||| || ||||| ||||| || | | || | |||||||| Sbjct 14295 AACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTC 14354 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 14355 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 14414 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||| || |||||||| ||||| | || || || | || | |||||| Sbjct 14415 GATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTT 14474 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 14475 CCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| | ||| ||||| || ||||| ||||| || | | || | |||||||| Sbjct 13839 AACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTC 13898 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 13899 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 13958 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || |||||||| ||||| | || || || | || | |||||| Sbjct 13959 GATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTT 14018 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 14019 CCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| | ||| ||||| || ||||| ||||| || | | || | |||||||| Sbjct 14067 AACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTC 14126 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 14127 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 14186 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || |||||||| ||||| | || || || | || | ||||| Sbjct 14187 GATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTT 14246 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 14247 CCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 >seq4755 Length=318840 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || ||||| || | | ||| | ||||| || ||||| Sbjct 279882 GTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTG 279823 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | |||||||| || |||||||| || || || || || || || Sbjct 279822 CTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGGATCTT 279763 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 || || |||||||| ||||| |||| || ||||| | |||| |||||| || Sbjct 279762 AGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAAGTAATCGTCTTACC 279706 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| ||| ||||| || | |||||| Sbjct 279705 AGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| ||||| ||||| ||||| || ||||| || | | ||| | Sbjct 280580 AGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGA 280521 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || ||||||||||| || ||||| | |||||||| || |||||||| || || Sbjct 280520 CCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCC 280461 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 || || || || || || || |||||||| ||||| |||| || ||||| | Sbjct 280460 TTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAA 280404 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||| || |||| ||| || || || | ||||| Sbjct 280403 GTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || ||||| || | | ||| | ||||| || ||||| Sbjct 280110 GTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTG 280051 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | |||||||| || |||||||| || || || || || || || Sbjct 280050 CTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTT 279991 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 || || |||||||| ||||| |||| || ||||| | |||| |||||| || Sbjct 279990 AGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAAGTAATCGTCTTACC 279934 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||| || || || | ||||| Sbjct 279933 AGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || ||||| || | | ||| | ||||| || ||||| Sbjct 280338 GTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTG 280279 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | |||||||| || |||||||| || || || || || || || Sbjct 280278 CTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTT 280219 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 || || |||||||| ||||| |||| || ||||| | |||| |||||| || Sbjct 280218 AGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAAGTAATCGTCTTACC 280162 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||| || || || | ||||| Sbjct 280161 AGTCAGAGTCTTCACAAATATCTGCAT 280135 >seq11996 Length=10337 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| | ||| ||||| || ||| | ||||| || | | || | |||||||| Sbjct 10337 AACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTC 10278 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| |||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 10277 CAACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 10218 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT 195079 |||||| || || |||||||| |||| Sbjct 10217 AATTTTCGCTTTCACATTCTCAATCGTGT 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109125536843816