Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3731 113 3e-20 seq4124 87.8 1e-12 seq4755 86.0 4e-12 >seq3731 Length=1156867 Score = 113 bits (124), Expect = 3e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 34772 AACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCAT 34830 ||||||| |||| ||| ||||| ||| ||||||||||| || | | ||| | |||| | Sbjct 1054737 AACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTT 1054678 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 |||| ||||| || ||||| || || ||||| || ||| | || | ||||| || || Sbjct 1054677 CCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATCTT 1054618 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || || || | | | || | ||| | | |||||| || | ||||| |||| Sbjct 1054617 GGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTT 1054558 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || || |||||||| |||||||| || Sbjct 1054557 TCCCCGTAAGTGTTTTCACAAAAATCTGCATGTT 1054524 >seq4124 Length=298687 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||| |||||| || || ||| Sbjct 13630 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 13689 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | || || || || ||| ||| || || || Sbjct 13690 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCAC--AT 13747 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| | |||||| || | || || || || ||||| | ||||||| Sbjct 13748 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 13807 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 13808 CAAAGATCTGCATA 13821 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||| |||||| || || ||| Sbjct 13858 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 13917 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | || || || || || ||| ||| || || Sbjct 13918 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCAC--AT 13975 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| | |||||| || | || || || || ||||| | ||||||| Sbjct 13976 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 14035 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 14036 CAAAGATCTGCATA 14049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||| |||||| || || ||| Sbjct 14086 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14145 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | || || || || || ||| ||| || || Sbjct 14146 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCAC--AT 14203 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| | |||||| || | || || || || ||||| | ||||||| Sbjct 14204 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCA 14263 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 14264 CAAAGATCTGCATA 14277 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||| |||||| || || ||| Sbjct 14314 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14373 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | || || || || || ||| || || || Sbjct 14374 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCCTTCAC--AT 14431 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| | |||||| || | || || || || ||||| | ||||||| Sbjct 14432 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 14491 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 14492 CAAAGATCTGCATA 14505 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||| |||||| || || ||| Sbjct 14542 TCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAAT 14601 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | || || || || || ||| ||| || || Sbjct 14602 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCAC--AT 14659 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| | |||||| || | || || || |||||||| | |||||| | Sbjct 14660 TCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAA 14719 Query 34969 CAAAGATCTGCAT 34981 | || |||||||| Sbjct 14720 CGAAAATCTGCAT 14732 >seq4755 Length=318840 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | || || || || ||||| ||||| || | | || |||| Sbjct 280574 AACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCC 280515 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||||||| || || ||||| |||| ||||| || || | || | |||||||| || Sbjct 280514 TCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCC 280455 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| || || || || | |||| | |||||| || | || || | Sbjct 280454 TGGATCTTAGCTTTCAC--ATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCG 280397 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||||||||| ||||||||| Sbjct 280396 TCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 280362 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| || | | || |||| ||| Sbjct 280115 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280056 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| |||| ||||| || || | || | |||||||| || Sbjct 280055 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 279996 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | |||| | |||||| || | || || || | Sbjct 279995 ATCTTAGCTTTCAC--ATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCT 279938 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || |||||||||||||| ||||||||| Sbjct 279937 TACCAGTCAGAGTCTTCACAAATATCTGCATA 279906 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| || | | || |||| ||| Sbjct 280343 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280284 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| |||| ||||| || || | || | |||||||| || Sbjct 280283 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 280224 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | |||| | |||||| || | || || || | Sbjct 280223 ATCTTAGCTTTCAC--ATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCT 280166 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || |||||||||||||| ||||||||| Sbjct 280165 TACCAGTCAGAGTCTTCACAAATATCTGCATA 280134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324534498289344