Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5310 293 3e-74 seq4842 136 4e-27 >seq5310 Length=161011 Score = 293 bits (324), Expect = 3e-74 Identities = 562/821 (68%), Gaps = 12/821 (1%) Strand=Plus/Plus Query 18765 ttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCAT 18824 ||||| | | || | ||| | || || | ||| || | |||| |||||| | ||| Sbjct 62781 TTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACTGGCACAT 62840 Query 18825 CATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTC 18884 | | ||||||||||| ||||| | || || | || || | ||||| |||||||| Sbjct 62841 TAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACTCTTGTTC 62900 Query 18885 TATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAG 18944 || || ||||| ||||| || |||| | | | ||| ||| | | || Sbjct 62901 GATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACCC---TAGAAGGCTTTTTAAT 62957 Query 18945 A---TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001 | || ||||||| | ||| || || |||||||||| ||| ||||||||||| || || Sbjct 62958 AATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAA 63017 Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 |||||| ||| | || |||||||| ||||||| || || | ||| ||||||| || Sbjct 63018 CTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGC 63077 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 || || || || || | ||||||||||||||||| ||||| | | |||| || | Sbjct 63078 GAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAA 63137 Query 19122 ACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 ||| | | || | |||||| | || |||||| | ||| || || |||||| | Sbjct 63138 CGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACACAAGT 63197 Query 19182 CA--TTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCA 19239 | ||| || ||||| ||| || ||| | | || | | ||||| | ||| | | Sbjct 63198 TAGGTTG-CT-TATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGATATACGTA 63255 Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || || | || | ||||||||| ||||||||||| || ||||| ||||| | || ||| Sbjct 63256 TCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCCATAA 63315 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 ||||| | | || | |||||||| || || ||| | ||| | || ||||| | Sbjct 63316 AAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGA 63375 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCT 19419 |||||||||||||| || ||||| ||||| || |||| | |||||||| ||| | Sbjct 63376 ACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACGTTC-CCC 63434 Query 19420 GAGGTTAA-TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCA 19478 | |||| || | ||||| | | ||||| || ||||| || ||||| || ||||| Sbjct 63435 AACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGTCCA 63494 Query 19479 AAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||||||||| | || ||||| || | | ||| |||||| |||||| ||| || || | Sbjct 63495 GAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGGGAAAAG 63554 Query 19539 AACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCATTT 19579 |||||| | | | ||| |||||| | ||||||| || Sbjct 63555 AACAAAACGGTGTGGGTTTGGTTTAAGCAAGGGTTCCAGTT 63595 >seq4842 Length=69696 Score = 136 bits (150), Expect = 4e-27 Identities = 279/409 (68%), Gaps = 7/409 (2%) Strand=Plus/Plus Query 47058 TAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 |||||||||||||| |||| ||| |||| | |||| | || ||| | |||||||||| Sbjct 40527 TAGAAATGCATACTTGTTATTTTTCCATAATTTGGTTGAGCAAGATGCAAATTAAGAGAT 40586 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 || ||||| |||||||||| | | | ||||||||||| | ||| || ||| | Sbjct 40587 TGGCTCTGGTCAATAAATGGGGCACGGCCTGCTGCCATATCAATAATCTTCCGTTGAGAA 40646 Query 47178 ATCTCCCATACTGTTTTATA-AATTTGTTTAATGTCTTCTGGGA---GATTAGTATTTTG 47233 |||||||| |||||||| || || ||||| ||| || || | || ||| ||| Sbjct 40647 ATCTCCCACACTGTTTTGTACAAAGGTTTTAAAGTC-TCGGGAATTCCATCTATATGTTG 40705 Query 47234 AATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttc 47293 |||||||||| || | ||| |||| | ||| | ||||| | | || Sbjct 40706 AATAGATCCTTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACCCTAATTT 40765 Query 47294 agttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTAC 47352 || ||| || | || ||||| || || |||| |||||||| ||| || || | || Sbjct 40766 AG-TAAGGTCATCAAGAAGATATGGGTTTACAACCTGAAATTCACCACTTAACACACGAC 40824 Query 47353 GGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAG 47412 | | ||| || |||||| | |||||| | |||||||| || || | || |||| | Sbjct 40825 GAGAAAATACGTTGCTTGTAAAGGGTTCTGTTGATTCATTGTTCCCGAGGATCTGAGATG 40884 Query 47413 TTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATA 47461 ||||||| || ||||| | || | || | ||||| | || ||||| Sbjct 40885 TTGATGCAGTTGGCATTGGGGCCAATAGAAGACTATTCCGTAAACCATA 40933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561932803734720