Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3765 188 6e-42 seq3731 138 9e-27 seq4294 131 1e-24 seq4124 91.5 1e-12 >seq3765 Length=693835 Score = 188 bits (208), Expect = 6e-42 Identities = 340/492 (69%), Gaps = 10/492 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC--A 550109 |||||||||||||||||||| || ||||| |||| ||| || || |||||| | | | Sbjct 99371 GTTGAAATTATTGCCAATGACCAGGGTAATAGAATTACCCCTTCATATGTTGCATCACTA 99430 Query 550110 CGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCA 550169 ||||| ||||| | |||| ||||| || ||| | || || || ||| | Sbjct 99431 CGGAAGGTGAACGGCTGATTGGAGATGCTGCCAAAAACCAGCTAACATCAAACCCTGAAA 99490 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 |||| ||||||||| ||| | | || ||||| | ||| | || ||||||||||||| Sbjct 99491 ATACAGTTTTTGATGTCAAAAGACTTATCGGAAGGACGTTTGACGAATCGACTGTTCAGG 99550 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 ||||| ||||| | || || | ||||| ||||| ||| |||||| Sbjct 99551 AGGATATAAAGCACTTTCCATTTTCTGTCGTTAACAAAAAGAACAAACCATATGTTGAAG 99610 Query 550290 CTACTCATGAAGGATCTG---TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | |||| ||||| | ||||| ||| ||||||| |||| || | ||||||| Sbjct 99611 TT---CATGTTGGATCAGAAGTTAAATCGTTTGCACCAGAGGAAATCTCTGCAATGGTTT 99667 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTA-CGGATGCAGTA 550405 | |||||||| | || || | | ||||| |||||| || || |||||||| Sbjct 99668 TGGGAAAAATGAAGAGCAGTGCTGAAGCATATCTTGGT-AAGAAGGTAACGCATGCAGTA 99726 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| ||||| ||||| || || | || ||||| || || ||||||||||| Sbjct 99727 GTCACTGTCCCAGCTTATTTCAACGATGCGCAGCGTCAGGCAACAAAAGATGCTGGGACA 99786 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || ||||| | |||| ||||| || || || ||||| || |||||||| |||| ||| Sbjct 99787 ATAGCTGGTTTAGATGTACTTCGAATCATTAACGAACCAACCGCTGCTGCTATTGCTTAT 99846 Query 550526 GGACTTGATAAA 550537 || || |||||| Sbjct 99847 GGCCTAGATAAA 99858 Score = 98.7 bits (108), Expect = 8e-15 Identities = 245/370 (66%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266 |||||||||||||| || ||||| |||||||| ||| | || | | ||| | ||| Sbjct 100603 GTTAATCCAGATGAAGCCGTTGCTTATGGTGCGGCAGTCCAGGGTGGCATTATCGGTGG- 100661 Query 552267 CAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 || ||||| ||| | | || ||| | ||||| || ||| || | || Sbjct 100662 -----TGTGGAAAATACTGGTGG-TGTCGTCCTTTTGGATGTATGCCCGCTAACTTTGGG 100715 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | | ||||||||||| || | ||||| || |||||| |||||||| ||| || Sbjct 100716 TATTGAAACAGTTGGTGGCGTCATGACCAAACTTATCCCAAGAAATACAGTTATCCCAAC 100775 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 || || || | |||||||||| | || || ||| | |||| || || || | Sbjct 100776 AAAGAAGTCACAGATATTTTCTACAGCCGCTGACAACCAACCGACTGTCACCATACAGGT 100835 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 ||| || || || | | || ||| |||| || ||||| | ||| || | Sbjct 100836 TTTCGAGGGTGAGCGGGCCATGACGAAATTTAATCATTTTCTTGGCAAGTTTGATCTCAC 100895 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||||||||| || || ||||| || || ||||||||||| || ||||| ||||||| Sbjct 100896 AGGTATTCCCCCAGCATTGCGTGGCGTCCCACAAATTGAAGTGACATTCGAAATCGATGT 100955 Query 552566 CAATGGAATT 552575 ||||| ||| Sbjct 100956 AAATGGTATT 100965 >seq3731 Length=1156867 Score = 138 bits (152), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||||||||| ||| ||||| || || || |||| | |||||| |||||| | Sbjct 1054734 CAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCA 1054675 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||||||| || ||||||||||| | ||| ||||| || || || || ||||||||||| | Sbjct 1054674 GTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGA 1054615 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 |||| || ||||| ||||||||||||| | | ||| || || | |||||| | Sbjct 1054614 TTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCC 1054555 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| ||||| || ||||| ||||| Sbjct 1054554 CCGTAAGTGTTTTCACAAAAATCTGCAT 1054527 >seq4294 Length=102949 Score = 131 bits (144), Expect = 1e-24 Identities = 338/513 (66%), Gaps = 8/513 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||| | || || |||||| ||||| ||||| | || |||||||| Sbjct 80324 GCTATTGGAATTGATCTTGGTACGACATATTCGTGTGTCGGTGTATTCCAGCATGGTAAA 80383 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| || ||||| || || || || ||| | || || || |||||| | ||||| Sbjct 80384 GTTGAGATAATTGCTAACGACCAGGGAAACCGTACGACGCCGAGTTATGTAGCGTTCACA 80443 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||| | | | |||||||||||||| || | |||| | ||| || || || Sbjct 80444 GACGCTGAGCGTCTGGTTGGTGATGCAGCGAAGAACCAAGTGGCGACTAACCCAACGAAC 80503 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | ||||| || || || | || || | | || ||||| | | || ||| Sbjct 80504 ACAGTGTTTGACGCGAAGCGGCTGATCGGTCGTCGATTCGATGATGCATCAGTGCAGAGT 80563 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| ||| || | ||||| ||| || || ||| | |||| || | Sbjct 80564 GATATGAAGCATTGGCCATTCAAAGTGGTTAAGGTTGGTGAGAAGCCTAAGATTGTAGTT 80623 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | | || | || || | ||||| | |||||||||||||| || | Sbjct 80624 GAGTACAAGGGTGAGGAGAAGTCGTTCTTTCCAGAGGAGATTTCATCTATGGTGTTGGTC 80683 Query 550352 AAAATGAAACA---AACAGCCAGTGCTTT-TGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 ||||| | | || ||| ||| | |||| || || || ||||| || Sbjct 80684 GCGATGAAGGAGGTGGCTGCGAGTTATTTGGGGAGGTC----GGTGACTGACGCAGTTAT 80739 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||| || || || || || || || ||||||||||| || || ||||| || || Sbjct 80740 AACGGTTCCTGCTTACTTCAACGATAGTCAACGTCAAGCGACGAAGGATGCAGGTGCGAT 80799 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||||| |||||||| | | || || ||||| Sbjct 80800 AGCTGGTCTTAATGTGTTGAGAATAATTAATGA 80832 >seq4124 Length=298687 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||| || | ||| || || ||| ||||| |||| || || | Sbjct 14515 AGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGA 14574 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | ||||| || || || || | | ||| || ||||||||||| |||||| Sbjct 14575 CCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCT 14634 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 |||||||| ||||| ||| || |||||| || ||| | | | || | ||| Sbjct 14635 TTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTA 14694 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || | ||| ||||||||||| ||||| Sbjct 14695 ATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCAT 14732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027971348793520