Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5310 233 2e-56 >seq5310 Length=161011 Score = 233 bits (258), Expect = 2e-56 Identities = 600/912 (66%), Gaps = 44/912 (5%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| ||||| || |||| ||||| || ||||| ||||||| ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT----------------------AGTAC 36984 |||||||||||| |||||| | | ||| || | || Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 36985 TACA-------TGATAA-----TTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATT 37032 ||| | ||| ||| ||| |||| ||| |||| ||||| || || | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 |||||||| | | || || ||||||| | ||||| | || || ||||| Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGAT 37152 || ||| |||| || || || || | || || || ||| | | | || | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCA-TA-ATCGACTC-AACGCGAACCCTAGAAGGCT 62950 Query 37153 ATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTAC 37209 ||| | ||| | ||||||| | ||| || || ||||||||||| ||||| ||||||| Sbjct 62951 TTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTAC 63010 Query 37210 TTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATA 37269 | || || |||||| ||||| ||||| ||||| | |||| || || | |||||||| Sbjct 63011 TGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATA 63070 Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329 | || || || || || || |||| ||||| ||||||||||| || || | ||| Sbjct 63071 TAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTT 63130 Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389 | || || || || ||||| |||||| | || ||| | || ||| | Sbjct 63131 CTGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTA 63190 Query 37390 CACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 |||| || ||| || || || || || ||||||| | |||||| | ||| | || Sbjct 63191 CACAAGTTAGGTTGCTT--ATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGAT 63248 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 ||| ||||| ||||||| | ||||||||||| |||||||| || ||||||||||| | Sbjct 63249 ATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCAT 63308 Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTT 37567 ||||||||||| | | | || | | || || || | | ||| | | |||||| Sbjct 63309 CCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTT 63368 Query 37568 TTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 37627 ||| |||||| |||||||| || |||||||| || | |||||| ||||||||| | Sbjct 63369 TTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACG 63428 Query 37628 TTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAAC 37687 ||| || | | | ||||| | | ||||| || ||||| || || || || Sbjct 63429 TTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTAC 63488 Query 37688 GGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGG 37747 ||||| ||| |||| || ||| || | ||| ||||||| || || ||| || Sbjct 63489 AGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGG 63548 Query 37748 AAATATTACAAA 37759 || | ||||| Sbjct 63549 GAAAAGAACAAA 63560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592131345609920