Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq16058 98.7 3e-16 >seq16058 Length=1913 Score = 98.7 bits (108), Expect = 3e-16 Identities = 489/765 (64%), Gaps = 24/765 (3%) Strand=Plus/Plus Query 18829 GGAGCTAGGTGGTCCGTAGATCAGATGGATAATGTAAATCCATTTAACCACCACCGTAAT 18888 || || |||||||| | || | ||||| ||||| |||||||||||||||||||| ||| Sbjct 81 GGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCACCGGAAT 140 Query 18889 TGGGGATTAAAGTATAGGTCTCAGTTACTAGGTAATAGTAGATACTGT-AATTTTCACAT 18947 || || || |||| | | || || ||| | | || ||| ||| ||||| Sbjct 141 GCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTA-TGTGCCTTTCCACAT 199 Query 18948 TCAGGTACCTCAAAAGTATTTCGCGATTAAAAATCTACTGTTACTTCCTGGCTCATATAC 19007 || || |||||||| | || || | || || ||||| | || |||||||| || || Sbjct 200 ACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCCTACAC 259 Query 19008 GTATGAGTGGGTACTAAGGAAGGATCCTAACATGATTTTACAATCAAGTT---TAGGTAA 19064 ||||||||| | || |||| | |||||| | | || ||||| | || || Sbjct 260 CTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCA---AAGTTCCCTTGGAAA 316 Query 19065 TGACTTGAGAATAGATGGAGCATCCGTAGTGTTTAATGAG-GTAAACCT-TATGGCAAGT 19122 |||| | |||| |||||| || | || |||| | || | ||||| |||| || | Sbjct 317 TGACCTCAGAACAGATGGTGCTAACATA-AGTTTCACCAGCATCAACCTCTATGCCACCT 375 Query 19123 TTTATGCCGATGGATCACAATACAAGTAACCAAT-TAGAGTTAATGATGCGTAATGCCAC 19181 | | | || |||| |||||| || | | | | | || ||| |||| || | || Sbjct 376 TCT-TCCCCATGGCTCACAACAC-CGCTTCAACTCTTGAAGCCATGCTGCGCAACGATAC 433 Query 19182 AAATGATCAGACATTTATGGATTATCTAGGAGCA--AAAAATGCTTTATATAGCATTCCT 19239 ||||||||| |||| | || || || ||| || |||||| || ||| ||| Sbjct 434 CAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTT--TACCCCATCCCT 491 Query 19240 TCAAATTCTACTCAGGTAACGATAAATATTCCAGCTAGAACTTGGGAGGGAATGAGAGGG 19299 | ||| | || | | | || || ||| || | | |||| | | || || Sbjct 492 GCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGC 551 Query 19300 TGGTCGTTTACTAGACTAAAGTCAAAAGAGACTCCTCAGCAAGGAGCACAGTATGATGTA 19359 ||||| || || ||||| || | || |||||||| | ||| || || ||| Sbjct 552 TGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGATCCC 611 Query 19360 AATTTCAAATATTCTGGTAGTATTCCTTATTCAGATGGAACTTTCTACCTTAATCATACC 19419 | ||| |||||||| |||||| || ||||| ||||| |||||||| || || Sbjct 612 TACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCACACT 671 Query 19420 TTTAGAAATATGAGTATATTGTTCGACACTTCTATTAATTGGCCAGGTAACGATAGGCTA 19479 || | || || |||| ||| | || | | ||||| || || || ||||| Sbjct 672 TTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTG 731 Query 19480 ATGAGTCCTAATATGTTCGAAATTAAGAGATCTACTTCCGCCGATCCTGAAGGTTTCACT 19539 || ||| ||| ||| ||||| ||| | || | ||| ||||| | || | Sbjct 732 TTGTCTCCAAATGAGTTTGAAATCAAGCGCACT------GTGGATGGGGAAGGATACAAT 785 Query 19540 ATGTGTCAAAGCGACATAACAAAGGACTGGTGGTTAATTCAGATG 19584 || ||| || |||| || || ||||||| | |||||||| Sbjct 786 GTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATG 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138640349851488