Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4755 127 2e-24 seq3731 123 2e-23 seq4124 107 2e-18 seq11996 84.2 2e-11 >seq4755 Length=318840 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || || || || || || || ||||| || ||||| || | | ||| | || Sbjct 280577 CGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCA 280518 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| |||||||| ||||| || ||||| ||||||||||| ||||| || || ||| Sbjct 280517 TCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTA 280458 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || || ||| ||| | || | ||||||| | || ||||| | ||| | | Sbjct 280457 TCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATC 280398 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||| || |||||||||||||| Sbjct 280397 GTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || ||||| || ||||| || | | ||| | |||| ||| Sbjct 279887 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 279828 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || ||||| ||||||||||| ||||| || || ||||| || Sbjct 279827 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGG 279768 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||||| | || ||||| | ||| | ||| || Sbjct 279767 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 279708 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| ||||||||||||||||| Sbjct 279707 CCAGTCAGAGTCTTTACAAATATCTGCAT 279679 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || ||||| || ||||| || | | ||| | |||| ||| Sbjct 280115 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280056 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || ||||| ||||||||||| ||||| || || ||||| || Sbjct 280055 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 279996 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||||| | || ||||| | ||| | ||| || Sbjct 279995 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 279936 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || |||||||||||||| Sbjct 279935 CCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || ||||| || ||||| || | | ||| | |||| ||| Sbjct 280343 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280284 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || ||||| ||||||||||| ||||| || || ||||| || Sbjct 280283 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 280224 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||||| | || ||||| | ||| | ||| || Sbjct 280223 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 280164 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || |||||||||||||| Sbjct 280163 CCAGTCAGAGTCTTCACAAATATCTGCAT 280135 >seq3731 Length=1156867 Score = 123 bits (136), Expect = 2e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| |||||||||| ||||| || || || | || ||||| |||| |||| ||| Sbjct 1054730 ATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGTTG 1054671 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| || | ||| |||||||| || || || || ||||||||||| ||||| Sbjct 1054670 TTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGATTTT 1054611 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || ||| | || |||| | || |||||||| || | ||||| || || Sbjct 1054610 AGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCCGT 1054551 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||| ||||||||| Sbjct 1054550 AAGTGTTTTCACAAAAATCTGCATG 1054526 >seq4124 Length=298687 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| || ||||| || ||||||||||| ||||| || || ||||| ||||||| Sbjct 13664 CATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 13723 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||||||||| || ||| | || | |||||| | || || || | |||| Sbjct 13724 TATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGA 13783 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || || || || ||||| |||||||| Sbjct 13784 TCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| || ||||| || ||||||||||| ||||| || || ||||| ||||||| Sbjct 13892 CATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 13951 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| ||||| ||| ||| | || | |||||| | || || || | |||| Sbjct 13952 TATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGA 14011 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || || || || ||||| |||||||| Sbjct 14012 TCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| || || || || ||||| || | | || | |||| ||||| || ||||| Sbjct 14536 GTAGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCA 14595 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || ||||||||||| ||||| || || ||||| |||||||||||||| ||||| ||| Sbjct 14596 GCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTC 14655 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | |||||| | || || || | || | ||| || || || ||||| Sbjct 14656 ACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTC 14715 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 14716 TTAACGAAAATCTGCAT 14732 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| || ||||| || ||||||||||| ||||| || || ||||| ||||||| Sbjct 14120 CATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 14179 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| ||||| ||| ||| | || | |||||| | || || || | |||| Sbjct 14180 TATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGA 14239 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || ||||| |||||||| Sbjct 14240 TTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| || ||||| || ||||||||||| ||||| || || ||||| ||||||| Sbjct 14348 CATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 14407 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| ||||| || ||| | || | |||||| | || || || | |||| Sbjct 14408 TATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGA 14467 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || || || || ||||| |||||||| Sbjct 14468 TCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 >seq11996 Length=10337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| || |||| || ||||||||||| ||||| || || ||||| ||||||| Sbjct 10284 CATCTTCCAACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 10225 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGT 101408 ||||||||||||| ||| ||| | || | |||| Sbjct 10224 TATCTTGAATTTTCGCTTTCACATTCTCAATCGTGT 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396157427102136