Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_020074.1 Length=30024 Score E Sequences producing significant alignments: (Bits) Value seq16058 125 1e-24 >seq16058 Length=1913 Score = 125 bits (138), Expect = 1e-24 Identities = 215/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 16073 AATATTGGAGCCAGGTGGTCCCTTGATATAATGGACAATATAAATCCTTTTAATCATCAT 16132 || ||||| ||||||||||| ||||| |||||||||| | ||||| ||||| || || Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 16133 AGAAATATGGGTTTAAAATACAGATCTCAGTTATTGGGCAATGGCAGGTATAGCAGATTT 16192 | ||| || || ||| | || | | ||||||||||| | ||| || Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCCTTTC 194 Query 16193 CATATTCAAGTACCTCAAAAGTTCTTTGCGATTAAGAACCTTTTGTTGCTGCCTGGCACT 16252 || || ||||| |||||||| |||||||| | |||||||| | | || |||||| | Sbjct 195 CACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCC 254 Query 16253 TACAATTATGAATGGTACTTTAGGAAAGATCCCAATATGATTCTCCAATCTTCTATTGGA 16312 |||| ||||| ||| |||| || || | | || ||| | || ||| ||| ||||| Sbjct 255 TACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGGA 314 Query 16313 AATGATTTAAGAGCTGATGGTGCTTATATCAACTACACTAATATTAATCTATACGTTTCT 16372 ||||| | ||| | ||||||||| | || | | ||| | || || || || | | Sbjct 315 AATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCACC 374 Query 16373 TTCTTTCCAATG 16384 ||||| || ||| Sbjct 375 TTCTTCCCCATG 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95926658605536