Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3765 201 7e-46 seq3731 132 3e-25 seq5445 122 6e-22 seq4294 114 8e-20 seq4755 104 2e-16 seq4124 93.3 3e-13 seq3781 91.5 1e-12 >seq3765 Length=693835 Score = 201 bits (222), Expect = 7e-46 Identities = 346/495 (70%), Gaps = 12/495 (2%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT--TTA 474446 || ||||| |||||||||||||| |||||||||| || || ||||||||| | | || Sbjct 99371 GTTGAAATTATTGCCAATGACCAGGGTAATAGAATTACCCCTTCATATGTTGCATCACTA 99430 Query 474447 CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCT-GCATCTAATCCTGTT 474505 | ||| ||||| || |||||||||||||| ||| | | |||| |||| || |||| Sbjct 99431 CGGAAGGTGAACGGCTGATTGGAGATGCTGCCAAA-AACCAGCTAACATCAAACCCTGAA 99489 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| ||||||||| |||||| | || || | | ||||| || | ||||| || Sbjct 99490 AATACAGTTTTTGATGTCAAAAGACTTATCGGAAGGACGTTTGACGAATCGACTGTTCAG 99549 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||| || | || ||| || | || ||||||||| | ||| Sbjct 99550 GAGGATATAAAGCACTTTCCATTTTCTGTCGTTAACAAAAAGAACAAACCATATGTTGAA 99609 Query 474626 GCAATACACGCAGG---TGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | || | || ||| |||| ||| |||| || |||| ||| |||||||| Sbjct 99610 G---TTCATGTTGGATCAGAAGTTAAATCGTTTGCACCAGAGGAAATCTCTGCAATGGTT 99666 Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGT 474741 || | |||||||| | || |||||||||| ||||| ||||| ||||||| Sbjct 99667 TTGGGAAAAATGAAGAGCAGTGCTGAAGCATATCTTGG-TAAGAAGGTAACGCATGCAGT 99725 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 | | ||||| ||||| ||||| || ||| | || ||||| ||||| |||||||| || | Sbjct 99726 AGTCACTGTCCCAGCTTATTTCAACGATGCGCAGCGTCAGGCAACAAAAGATGCTGGGAC 99785 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||| || ||| | |||| | || || ||||| |||||||| || || || ||||||| Sbjct 99786 AATAGCTGGTTTAGATGTACTTCGAATCATTAACGAACCAACCGCTGCTGCTATTGCTTA 99845 Query 474862 TGGTCTTGATAAGAA 474876 ||| || ||||| || Sbjct 99846 TGGCCTAGATAAAAA 99860 Score = 104 bits (114), Expect = 2e-16 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 || ||| ||||||||||||| || | ||||| || ||||| |||||||| |||| Sbjct 100711 TTGGGTATTGAAACAGTTGGTGGCGTCATGACCAAACTTATCCCAAGAAATACAGTTATC 100770 Query 475964 CCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATC 476023 ||| || || ||| | ||||||| || |||| || ||| | ||||| ||||| Sbjct 100771 CCAACAAAGAAGTCACAGATATTTTCTACAGCCGCTGACAACCAACCGACTGTCACCATA 100830 Query 476024 CAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAAT 476083 || | || || ||||| | | || ||| |||| | ||||| | ||| || Sbjct 100831 CAGGTTTTCGAGGGTGAGCGGGCCATGACGAAATTTAATCATTTTCTTGGCAAGTTTGAT 100890 Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 || ||||||||| || || | || || || ||||||||||| || || || || Sbjct 100891 CTCACAGGTATTCCCCCAGCATTGCGTGGCGTCCCACAAATTGAAGTGACATTCGAAATC 100950 Query 476144 GATGCAAATGGTATTCT 476160 |||| |||||||||||| Sbjct 100951 GATGTAAATGGTATTCT 100967 >seq3731 Length=1156867 Score = 132 bits (146), Expect = 3e-25 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTAC-AAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 |||||| || || || ||||||||||||| ||||| | ||||| |||| | | Sbjct 1054749 ACGAAGTCGAAGAACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGG 1054690 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 |||| |||||| ||||| || |||||||||||||||||||||||||| || || || | Sbjct 1054689 TTCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATAC 1054630 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 | || || ||||| || || || || |||||||| ||||||| | | ||||| Sbjct 1054629 CCTCTTTATCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAA 1054570 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || |||||||| || || || || || || ||||| || Sbjct 1054569 GCGTTATAGTTTTCCCCGTAAGTGTTTTCACAAAAATCTG 1054530 >seq5445 Length=49490 Score = 122 bits (134), Expect = 6e-22 Identities = 180/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 355236 ATTTGTTGAATATCCAGTGCCAATACCTTCTGTTCCATTAACTAAAATCATTGGAATTAC 355295 || ||||| ||| ||||| ||||| || |||| ||||||||| | ||||| ||||| | Sbjct 46538 ATGTGTTGCATAGCCAGTTCCAATGCCGTCTGCTCCATTAACAAGGATCATAGGAATAAT 46597 Query 355296 AGGTACATAAAATACTGGTTCAATCATTTTATTATCTTCAAATTGATGTTGCAATACATC 355355 || |||| | ||||||| || || |||||| || ||| ||| | || | | Sbjct 46598 TGGAGCATACCACTCTGGTTCGATACGTTGATTATCATCGAATAGATAATTTAACAAAGG 46657 Query 355356 AAAATCATGTTGTATGAAAATATATTTAGT-TAATTGA-TTGAGTTGTGTGAAGATATAT 355413 | ||||| ||| ||| ||| ||| | || ||| ||| || | | ||||||||||| Sbjct 46658 ATCATCAT-TTGCATGGAAA-ATAAGTCGTGTAAGTGAATTCAATGAAGTGAAGATATAA 46715 Query 355414 CGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTACCAAATTGACCATTGGGAAGT 355473 || | | |||| ||||||||||||||| | || ||||||||| |||||| | || | Sbjct 46716 CGAGAAGATGCAGCATCTTTGCCTCCACTAAGTCGTGTACCAAACTGACCAATTGGTTGA 46775 Query 355474 AATAAATTTA 355483 | |||||||| Sbjct 46776 AGTAAATTTA 46785 >seq4294 Length=102949 Score = 114 bits (126), Expect = 8e-20 Identities = 318/481 (66%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| ||||||||||| || ||||| || ||||| || || |||||| | ||| | Sbjct 75925 AATCCAGATGAAGCTGTGGCTTATGGTGCGGCTGTTCAGGCGGCTATTCTGAGTGGTGA- 75983 Query 475853 TCAGAC-GAGAAACTAAATAA--TATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 | || | || | | || | || ||| | |||| || ||||| | ||| ||||| Sbjct 75984 TAAGTCTGAAGATGTGAAGGACTTACTGT--TACTTGATGTGGCTCCATTGTCACTAGGT 76041 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 ||||| |||| ||| || | ||||| | ||| | | ||||| | ||||| Sbjct 76042 CTTGAGACAGCTGGGGGTGTGATGACGGCGTTGATTAAGCGGAATACAACGATCCCTACG 76101 Query 475970 AA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAA 476027 || | | ||||| || | | ||||| || || || || | |||| || || Sbjct 76102 AAGCATACTCAAACGT--TCACGACTTACTCAGACAACCAGCCTGGTGTACTTATTCAGG 76159 Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 | ||||| |||||| | | | || ||||| || || || || | || | || Sbjct 76160 TGTTTGAGGGTGAACGTACGATGACGAAAGACAACAATCTGCTGGGCAAGTTCGAGCTGT 76219 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 ||||||||| |||||||| | || |||||||| || || || || ||||| || |||| Sbjct 76220 CAGGTATTCCACCTGCTCCTCGTGGTGTTCCTCAGATCGAGGTGACGTTTGACATAGATG 76279 Query 476148 CAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAA 476207 | ||||||||||| ||||| ||||| ||| || ||| | ||| || || |||| Sbjct 76280 CGAATGGTATTCTGAATGTATCTGCTGTTGACAAGGCTACTGGTAAGGAGAACAAGATAA 76339 Query 476208 CTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAG 476267 | || ||||| | ||| | || | |||| |||| | |||||| || |||| | Sbjct 76340 CAATCACAAATGACAAGGGTCGTTTATCGAAAGAGGAAATAGATCGTATGATTAATGAGG 76399 Query 476268 C 476268 | Sbjct 76400 C 76400 >seq4755 Length=318840 Score = 104 bits (114), Expect = 2e-16 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| |||||||| || | |||||||||||| ||||||||||| ||||| Sbjct 280062 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTT 280003 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| ||| ||| |||||||| ||| || | || || ||| |||| Sbjct 280002 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAA-AGTAA 279944 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || |||||||| || || || || Sbjct 279943 TCGTCTTACCAGTCAGAGTCTTCACAAATATCTG 279910 Score = 104 bits (114), Expect = 2e-16 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| |||||||| || | |||||||||||| ||||||||||| ||||| Sbjct 280290 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTT 280231 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| ||| ||| |||||||| ||| || | || || ||| |||| Sbjct 280230 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAA-AGTAA 280172 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || |||||||| || || || || Sbjct 280171 TCGTCTTACCAGTCAGAGTCTTCACAAATATCTG 280138 Score = 104 bits (114), Expect = 2e-16 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| |||||||| || | |||||||||||| ||||||||||| ||||| Sbjct 280518 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTT 280459 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| ||| ||| |||||||| ||| || | || || ||| |||| Sbjct 280458 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAA-AGTAA 280400 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || |||||||| || || || || Sbjct 280399 TCGTCTTACCAGTCAGAGTCTTCACAAATATCTG 280366 Score = 100 bits (110), Expect = 2e-15 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| |||||||| || | |||||||||||| |||||||| || ||||| Sbjct 279834 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTT 279775 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| ||| ||| |||||||| ||| || | || || ||| |||| Sbjct 279774 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAA-AGTAA 279716 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || |||||||| || || || || Sbjct 279715 TCGTCTTACCAGTCAGAGTCTTTACAAATATCTG 279682 >seq4124 Length=298687 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || | ||| || || || || || |||| || || Sbjct 14511 ACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACGT 14570 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | || || ||||| || || | ||||||||| ||||||||||| || Sbjct 14571 ACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 14630 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 ||| || ||||| || || ||| ||| ||||| || ||| | | | || | ||| Sbjct 14631 TTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAA 14690 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||||||||||||| || Sbjct 14691 -CGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTG 14729 >seq3781 Length=653284 Score = 91.5 bits (100), Expect = 1e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 297421 GCAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTT 297480 |||||||| || | ||| |||||||| ||| | || ||||||||||| |||||||| Sbjct 476999 GCAGATTTCATTGCTGAAGGTATTGATCAGACACGTGGATGGTTTTATACATTATTAGTG 477058 Query 297481 CTTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTT 297540 | ||||| ||| ||||| | ||||| ||||| || ||||||||| ||||||||| Sbjct 477059 TTATCTACGGCTTTATTTGATCAACCACCATTTCGTAACTTAATTGTTAGTGGAATTGTT 477118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267104769747104