Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_021221.1 Length=45781 Score E Sequences producing significant alignments: (Bits) Value seq16058 116 1e-21 >seq16058 Length=1913 Score = 116 bits (128), Expect = 1e-21 Identities = 507/788 (64%), Gaps = 28/788 (4%) Strand=Plus/Plus Query 22051 AACATCGGCGCGCGGTGGTCCGTAGATCAGATGGACACGGTGAATCCGTTCAACCACCAC 22110 ||||| ||||| ||||||| | || | ||||||| |||||||| || ||||||||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 22111 CGCAACTGGGGTCTGAAGTACCGCTCCCAATTGCTGGGCAACAGCCGGTACTGT-CGGTT 22169 || || || || ||||| ||| | |||||||| |||| || ||| | || Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTA-TGTGCCTTT 193 Query 22170 CCACATTCAAGTGCCTCAGAAGTATTTCGCGATTAAGAACCTGTTGCTCCTGCCGGGCAC 22229 |||||| ||||||||||| || | || || | |||||||| | || || || ||| | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 22230 TTACACTTACGAATGGGTACTGAGGAAAGACCCCAACATGATCCTACAGTCGAGTT---T 22286 ||||| || || ||| | || || | |||||| |||| || |||| | Sbjct 254 CTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCA---AAGTTCCCT 310 Query 22287 GGGTAACGATCTGAGAGCAGACGGCGCGTCCATCGTGTATTCCGAG-GTCAATTTGATGG 22345 || || || || ||| |||| || || ||| || | | || |||| | | Sbjct 311 TGGAAATGACCTCAGAACAGATGGTGCTAACAT-AAGTTTCACCAGCATCAACCTCTATG 369 Query 22346 CCAACTTTATGCCCATGGACCATAACACGAGCAATCAGC---TGGAGCTGATGATGAGGA 22402 ||| ||| | ||||||| || ||||| || ||| | || ||| ||| || | | Sbjct 370 CCACCTTCTTCCCCATGGCTCACAACAC-CGC-TTCAACTCTTGAAGC-CATGCTGCGCA 426 Query 22403 ACGCCACCAACGACCAGACTTTCGCCGACTACCTGGGAGCGAAGAACGCTCTCTACCAGG 22462 ||| ||||| || ||| | ||| ||||||||| || ||| || |||| Sbjct 427 ACGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCA 486 Query 22463 TACCGGCGGGCTCTACGGCCCTCACGATCAACATTCCCGCCCGTACCTGGGAAGGAATGA 22522 | || || | || | | | || ||| || | || | ||||| || | | Sbjct 487 TCCCTGCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCA 546 Query 22523 GAGGATGGTCGTTTACCCGCGTCAAAGCGAACGAGACCCCTCAGCTGGGAGCGCAGTACG 22582 | || ||||| || ||| | ||||| | || ||||| || || ||| | || || Sbjct 547 GGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCG 606 Query 22583 ACGTCAATTTCAAGTACTCTGGCACCATCCCGTACTCCGACGGCACGTTTTACCTCACCC 22642 | | | ||| || ||||| | || || ||| || ||||| |||||||| | || Sbjct 607 ATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACC 666 Query 22643 ACACCTTCCGTAACATGAG---CGTCCTCTTCGACACGTCCATCAACTGGCCCGGTAACG 22699 |||| ||| || | | | | || | || ||| | || ||| |||||| || || | Sbjct 667 ACACTTTC---AAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATG 723 Query 22700 ACAGGCTTTTGGCGCCCAACCTCTTCGAAATCAAGCGTAACATTAGCATCGATACCGAAG 22759 ||||||| ||| | || || || ||||||||||| || | | ||| |||| Sbjct 724 ACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCG---CACT---GTGGATGGGGAAG 777 Query 22760 GGTTCACCATGTCGCAGTGCGATATCACCAAAGATTGGTACCTGATCCAGATGGCGACGA 22819 | | || || | || ||| | || |||||||| |||| |||| | |||||| | | Sbjct 778 GATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCA 837 Query 22820 ACTACAAC 22827 |||||||| Sbjct 838 ACTACAAC 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146334060714768