Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5310 125 1e-23 seq4755 107 3e-18 seq4124 96.9 5e-15 seq3731 95.1 2e-14 >seq5310 Length=161011 Score = 125 bits (138), Expect = 1e-23 Identities = 395/607 (65%), Gaps = 7/607 (1%) Strand=Plus/Plus Query 18128 TTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCT 18187 || ||||| ||||| ||| || | || | || || || ||| ||||| ||||| ||| Sbjct 62950 TTTTTAATAATGTGCTTA-AACAGAAGA--CAAGCGAAGTCACAATGTAATCCTTCGTCT 63006 Query 18188 CTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAA 18247 || ||||| || |||||||| | || || ||||| | |||| || || |||||| Sbjct 63007 CTACTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAA 63066 Query 18248 AATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAAT 18307 ||||| | ||||| || | || || || | || || || || || || | || Sbjct 63067 AATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAG 63126 Query 18308 CTTTCAGCAAAACTGTATTTATTGCTCAGTA-TCCATTTTTGTGCCCATTCTCCTTNNNN 18366 | ||| ||||| | | ||| ||| | |||| | |||||||| ||| Sbjct 63127 CGTTCTGCAAACGTAGACTTAGAA-TCACCAATCCAATCCAATGCCCATTGAGCTTTTTT 63185 Query 18367 NNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTT 18426 | ||| | || | ||||||||| || | | ||| ||||||| || ||||| Sbjct 63186 CGCTACACAAGTTAGGTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTT 63245 Query 18427 TATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTG 18486 ||||| || ||||||| | ||| |||||||||||||| || | || ||||||||||| Sbjct 63246 GATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTG 63305 Query 18487 AAAACTATAAAACGATCTAGCCT-CGGGATATTGAATCTCGCTATAAAATCTTTCTACCA 18545 | | |||||| | | | ||| |||||| || | ||| | ||| | ||| | | Sbjct 63306 CATCCCATAAAAACAGCGAACCTCCGGGAT-CTGTACCTCTTGACTAAAGCGTTCCAGTA 63364 Query 18546 AATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAAT 18605 | || || |||||| || ||| | || || |||||||| |||||| || |||| Sbjct 63365 AGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAAT 63424 Query 18606 GTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTT 18665 | ||| | |||| || | ||| | | ||||| || | ||| || |||| Sbjct 63425 GACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTT 63484 Query 18666 CCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTA 18725 | ||||| ||||| | | |||| |||||| | | | ||||| | || || || Sbjct 63485 CTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTA 63544 Query 18726 TAGGAAA 18732 | || || Sbjct 63545 TGGGGAA 63551 >seq4755 Length=318840 Score = 107 bits (118), Expect = 3e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||| || || ||||| || ||||| || | Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || |||||| ||| || || ||||| || || || ||||| || ||| Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| ||||||||||| || ||| | ||||| || || || | Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA-- 280540 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| ||| |||| || || || |||||| || | |||| ||| Sbjct 280541 ACATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGGTGGT 280590 Score = 100 bits (110), Expect = 4e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || || ||||||| || || ||||| || ||||| || Sbjct 279678 AATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG 279737 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| || |||||| ||| || || ||||| || || || ||||| || || Sbjct 279738 TGACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCA 279797 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||||||||| || ||| | ||||| || || || | Sbjct 279798 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA- 279856 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| |||| || || || ||| Sbjct 279857 -ACATCCAAAAGGAGTCGACTCTACACTTGGTG 279888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||| || || ||||| || ||||| || | Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || |||||| ||| || || ||||| || || || ||||| || ||| Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| ||||||||||| || ||| | ||||| || || || | Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA-- 280084 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| |||| || || || ||| Sbjct 280085 ACATCCAAAAGGAGTCGACTCTACACTTGGTG 280116 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||| || || ||||| || ||||| || | Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || |||||| ||| || || ||||| || || || ||||| || ||| Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| ||||||||||| || ||| | ||||| || || || | Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA-- 280312 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| |||| || || || ||| Sbjct 280313 ACATCCAAAAGGAGTCGACTCTACACTTGGTG 280344 >seq4124 Length=298687 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || |||| || ||||| ||||| || ||||| || || || || | Sbjct 14733 AATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 14674 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || |||||| ||||| |||||||||||||| || ||||| || || Sbjct 14673 TGACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCA 14614 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | || ||||| ||| | |||||| | || ||||| || || || Sbjct 14613 ACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAA 14554 Query 156002 TAT 156004 || Sbjct 14553 CAT 14551 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || || || || ||||| || || || | | Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||||| |||||||||||||| || ||||| || ||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| ||| | |||||| | || ||||| || || || Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869 Query 156003 AT 156004 || Sbjct 13868 AT 13867 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || || || || ||||| || || || | | Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||||| |||||||||||||| || ||||| || ||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| ||| | |||||| | || ||||| || || || Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097 Query 156003 AT 156004 || Sbjct 14096 AT 14095 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || || || || ||||| || || || | | Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||||| |||||||||||||| || ||||| || ||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| ||| | |||||| | || ||||| || || || Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13641 Query 156003 AT 156004 || Sbjct 13640 AT 13639 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || || || || ||||| || || || | | Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||||| |||||||||||||| || ||||| || ||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| ||| | |||||| | || ||||| || || || Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325 Query 156003 AT 156004 || Sbjct 14324 AT 14323 >seq3731 Length=1156867 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | |||||| | || || |||||||| || | ||||| || | Sbjct 1054524 AACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCT 1054583 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| ||| | || || |||||| ||||||||||| || || || ||||| Sbjct 1054584 GCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGAT 1054643 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | |||| ||| || || || || |||||| ||||| | || || ||| Sbjct 1054644 CAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTAT 1054703 Query 156000 AATATATCCAAAGAGGCGACGCTTCAT 156026 || ||| |||| | || |||||| Sbjct 1054704 AACATACAGTAAGAATCTACACTTCAT 1054730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731642850876800