Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21]
25,048 sequences; 402,743,189 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5310 125 1e-23
seq4755 107 3e-18
seq4124 96.9 5e-15
seq3731 95.1 2e-14
>seq5310
Length=161011
Score = 125 bits (138), Expect = 1e-23
Identities = 395/607 (65%), Gaps = 7/607 (1%)
Strand=Plus/Plus
Query 18128 TTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCT 18187
|| ||||| ||||| ||| || | || | || || || ||| ||||| ||||| |||
Sbjct 62950 TTTTTAATAATGTGCTTA-AACAGAAGA--CAAGCGAAGTCACAATGTAATCCTTCGTCT 63006
Query 18188 CTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAA 18247
|| ||||| || |||||||| | || || ||||| | |||| || || ||||||
Sbjct 63007 CTACTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAA 63066
Query 18248 AATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAAT 18307
||||| | ||||| || | || || || | || || || || || || | ||
Sbjct 63067 AATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAG 63126
Query 18308 CTTTCAGCAAAACTGTATTTATTGCTCAGTA-TCCATTTTTGTGCCCATTCTCCTTNNNN 18366
| ||| ||||| | | ||| ||| | |||| | |||||||| |||
Sbjct 63127 CGTTCTGCAAACGTAGACTTAGAA-TCACCAATCCAATCCAATGCCCATTGAGCTTTTTT 63185
Query 18367 NNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTT 18426
| ||| | || | ||||||||| || | | ||| ||||||| || |||||
Sbjct 63186 CGCTACACAAGTTAGGTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTT 63245
Query 18427 TATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTG 18486
||||| || ||||||| | ||| |||||||||||||| || | || |||||||||||
Sbjct 63246 GATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTG 63305
Query 18487 AAAACTATAAAACGATCTAGCCT-CGGGATATTGAATCTCGCTATAAAATCTTTCTACCA 18545
| | |||||| | | | ||| |||||| || | ||| | ||| | ||| | |
Sbjct 63306 CATCCCATAAAAACAGCGAACCTCCGGGAT-CTGTACCTCTTGACTAAAGCGTTCCAGTA 63364
Query 18546 AATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAAT 18605
| || || |||||| || ||| | || || |||||||| |||||| || ||||
Sbjct 63365 AGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAAT 63424
Query 18606 GTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTT 18665
| ||| | |||| || | ||| | | ||||| || | ||| || ||||
Sbjct 63425 GACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTT 63484
Query 18666 CCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTA 18725
| ||||| ||||| | | |||| |||||| | | | ||||| | || || ||
Sbjct 63485 CTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTA 63544
Query 18726 TAGGAAA 18732
| || ||
Sbjct 63545 TGGGGAA 63551
>seq4755
Length=318840
Score = 107 bits (118), Expect = 3e-18
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || || ||||||| || || ||||| || ||||| || |
Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || |||||| ||| || || ||||| || || || ||||| || |||
Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || || | ||| ||||||||||| || ||| | ||||| || || || |
Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA-- 280540
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||||| ||| |||| || || || |||||| || | |||| |||
Sbjct 280541 ACATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGGTGGT 280590
Score = 100 bits (110), Expect = 4e-16
Identities = 151/213 (71%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| |||||| | || || ||||||| || || ||||| || ||||| ||
Sbjct 279678 AATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG 279737
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | |||| || |||||| ||| || || ||||| || || || ||||| || ||
Sbjct 279738 TGACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCA 279797
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|||| | || || | ||| ||||||||||| || ||| | ||||| || || || |
Sbjct 279798 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA- 279856
Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
| ||||||| ||| |||| || || || |||
Sbjct 279857 -ACATCCAAAAGGAGTCGACTCTACACTTGGTG 279888
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || || ||||||| || || ||||| || ||||| || |
Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || |||||| ||| || || ||||| || || || ||||| || |||
Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || || | ||| ||||||||||| || ||| | ||||| || || || |
Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA-- 280084
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
| ||||||| ||| |||| || || || |||
Sbjct 280085 ACATCCAAAAGGAGTCGACTCTACACTTGGTG 280116
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || || ||||||| || || ||||| || ||||| || |
Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || |||||| ||| || || ||||| || || || ||||| || |||
Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || || | ||| ||||||||||| || ||| | ||||| || || || |
Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACA-- 280312
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
| ||||||| ||| |||| || || || |||
Sbjct 280313 ACATCCAAAAGGAGTCGACTCTACACTTGGTG 280344
>seq4124
Length=298687
Score = 96.9 bits (106), Expect = 5e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || |||| || ||||| ||||| || ||||| || || || || |
Sbjct 14733 AATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 14674
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | ||| || |||||| ||||| |||||||||||||| || ||||| || ||
Sbjct 14673 TGACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCA 14614
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|||| | ||||| | || ||||| ||| | |||||| | || ||||| || || ||
Sbjct 14613 ACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAA 14554
Query 156002 TAT 156004
||
Sbjct 14553 CAT 14551
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||| || || || || ||||| || || || | |
Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || |||||| ||||| |||||||||||||| || ||||| || |||
Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||| | || ||||| ||| | |||||| | || ||||| || || ||
Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869
Query 156003 AT 156004
||
Sbjct 13868 AT 13867
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||| || || || || ||||| || || || | |
Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || |||||| ||||| |||||||||||||| || ||||| || |||
Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||| | || ||||| ||| | |||||| | || ||||| || || ||
Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097
Query 156003 AT 156004
||
Sbjct 14096 AT 14095
Score = 89.7 bits (98), Expect = 8e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||| || || || || ||||| || || || | |
Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| ||||| |||||||||||||| || ||||| || |||
Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||| | || ||||| ||| | |||||| | || ||||| || || ||
Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13641
Query 156003 AT 156004
||
Sbjct 13640 AT 13639
Score = 89.7 bits (98), Expect = 8e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||| || || || || ||||| || || || | |
Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| ||||| |||||||||||||| || ||||| || |||
Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||| | || ||||| ||| | |||||| | || ||||| || || ||
Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325
Query 156003 AT 156004
||
Sbjct 14324 AT 14323
>seq3731
Length=1156867
Score = 95.1 bits (104), Expect = 2e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || ||| | |||||| | || || |||||||| || | ||||| || |
Sbjct 1054524 AACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCT 1054583
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|||||| ||| | || || |||||| ||||||||||| || || || |||||
Sbjct 1054584 GCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGAT 1054643
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | | |||| ||| || || || || |||||| ||||| | || || |||
Sbjct 1054644 CAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTAT 1054703
Query 156000 AATATATCCAAAGAGGCGACGCTTCAT 156026
|| ||| |||| | || ||||||
Sbjct 1054704 AACATACAGTAAGAATCTACACTTCAT 1054730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731642850876800
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