Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4124 116 7e-21 seq4755 114 2e-20 seq3731 96.9 6e-15 seq11996 87.8 3e-12 >seq4124 Length=298687 Score = 116 bits (128), Expect = 7e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | |||||||||| ||| || ||| || || || Sbjct 14503 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCA 14562 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||| ||||||||||| || || || | ||||||||||| Sbjct 14563 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 14622 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || || || | || Sbjct 14623 GGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCA 14682 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATA 172078 || || | ||||| || || || || || || |||| ||| ||||||||| | | ||| Sbjct 14683 ACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCATTCTGTGATA 14741 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | |||||||| | ||| || ||| || || || Sbjct 13819 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCA 13878 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||| ||||||||||| || || || | ||||||||||| Sbjct 13879 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 13938 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || || || | || Sbjct 13939 GGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCA 13998 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || ||||| || | || |||||||| Sbjct 13999 ACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | |||||||| | ||| || ||| || || || Sbjct 14047 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCA 14106 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||| ||||||||||| || || || | ||||||||||| Sbjct 14107 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 14166 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || || || | || Sbjct 14167 GGAATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCA 14226 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || ||||| || | || |||||||| Sbjct 14227 ACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | |||||||| | ||| || ||| || || || ||| Sbjct 13594 CCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13653 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || ||||| ||||||||||| || || || | ||||||||||| || Sbjct 13654 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13713 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||| ||||| || ||||| || || || | || || Sbjct 13714 ATACCTTCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACC 13773 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || || || || || ||||| || | || |||||||| Sbjct 13774 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | |||||||| | ||| || ||| || || || Sbjct 14275 ATACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCA 14334 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||| ||||||||||| || || || | ||||||||||| Sbjct 14335 GATAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 14394 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| || ||||| || || || | || Sbjct 14395 GGAATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCA 14454 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || ||||| || | || |||||||| Sbjct 14455 ACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 >seq4755 Length=318840 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| ||||||||| || || || | ||| | ||| || || || || || || Sbjct 280590 ACCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGA 280531 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||| || ||||||||||| ||||| | ||||| || || || Sbjct 280530 CAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 280471 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| || ||||| || || ||| ||| ||||| ||||| || | || || Sbjct 280470 AATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 280411 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | |||||| || |||||||| | || || | ||||||||||| Sbjct 280410 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || |||| ||| | ||| || || || || || Sbjct 280136 ATACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCA 280077 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||| || ||||||||||| ||||| | ||||| || || Sbjct 280076 GACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGA 280017 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || ||||| || || ||| ||| ||||| ||||| || | || Sbjct 280016 GGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCA 279957 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| || |||||||| | || || | ||||||||||| Sbjct 279956 ACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || |||| ||| | ||| || || || || || Sbjct 280364 ATACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCA 280305 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||| || ||||||||||| ||||| | ||||| || || Sbjct 280304 GACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGA 280245 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || ||||| || || ||| ||| ||||| ||||| || | || Sbjct 280244 GGAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCA 280185 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| || |||||||| | || || | ||||||||||| Sbjct 280184 ACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || |||| ||| | ||| || || || || || Sbjct 279908 ATACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCA 279849 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||| || ||||||||||| ||||| | ||||| || || Sbjct 279848 GACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGA 279789 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| ||| ||||| ||||| || | || Sbjct 279788 GGAATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCA 279729 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||| || |||||||| | || || | |||||||||||| Sbjct 279728 ACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 >seq3731 Length=1156867 Score = 96.9 bits (106), Expect = 6e-15 Identities = 172/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 171830 TAGTTTCA-TAATACCACCTCTAAGTCGTAATACTAA-ATGTAAAGTAGCCTCTTTAGAA 171887 ||| |||| | ||||| || | |||||| | || || ||| | |||| |||| Sbjct 1054768 TAGGTTCAATTATACCCCCACGAAGTCGAAGAACCAAGATGAAGTGTAGATTCTTACTGT 1054709 Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || || | | || | | || |||| |||||| ||||||||||| | | Sbjct 1054708 ATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGT 1054649 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAG 172005 ||||| || ||||| || || ||||||||||| |||||| || || | || || | Sbjct 1054648 TGTTGATCTGGTGGGATACCCTCTTTATCTTGGATTTTAGCNTTAAC--TGCTTCAATTG 1054591 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 |||| | | || ||||| || || || ||||| || || | |||||| | || |||| Sbjct 1054590 TATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCCGTAAGTGTTTTCACAAAAATCT 1054531 Query 172066 GCATTTT 172072 |||| || Sbjct 1054530 GCATGTT 1054524 >seq11996 Length=10337 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 |||||||||| ||| || | | || || || ||||| | || | || ||||| ||| Sbjct 10330 TGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGT 10271 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||| || || || | ||||||||||| || || |||||||||||||| ||||| Sbjct 10270 GTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTC 10211 Query 171987 TTTTTTACATT 171997 ||| ||||| Sbjct 10210 GCTTTCACATT 10200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904852601918400