Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8745 104 7e-17 seq5310 96.9 1e-14 >seq8745 Length=35083 Score = 104 bits (114), Expect = 7e-17 Identities = 175/248 (71%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| |||| || ||||||||| ||||||||||| ||||| | ||||||||| || Sbjct 19302 TGCACCATGTGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAAACCACCATCACG 19361 Query 251544 AGCCCTACCCTCGGCAGGCTGACGA-GTGAGATT--AACCATAGGACCGATGGAGCGGCT 251600 | | ||| || |||||||||| | | ||| ||| |||||| || || || Sbjct 19362 ACTACGACCTTCCATAGGCTGACGATTTAATATTTGAAC---AGGACCACGTGATCGACT 19418 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||| ||||||| ||||||||||| | ||| || || ||| || || | ||||| Sbjct 19419 ATGTATTTTATCATCAACCATATGCTTTAAACGTTGATAATATGTTGGTCCTAAAAAGAT 19478 Query 251661 GCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 ||| | |||| || |||||| | | |||||||||| || || ||| || || Sbjct 19479 TTGTGAATTCAATTTTCT-TCCAGTAAATCCATTATACATAATCTCATTACCAGTATGTT 19537 Query 251720 CATAACCA 251727 ||||||| Sbjct 19538 GATAACCA 19545 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||||||||||||||| ||||||||||| ||||| || || || || ||| | | ||| | Sbjct 21231 CGATAGTCATACGACTTGGAATAGCATGTGGATTAATAATAATATCTGGTGTAATTCCTT 21290 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCG 251961 || ||||| |||||||||| || | |||| || ||||| || || |||||||| Sbjct 21291 CACATGTGAACGGCATATCCTCTT-GACGATAACGTATTCCACATGTACCTTTTTGTCCA 21349 Query 251962 TGACGA 251967 || ||| Sbjct 21350 TGTCGA 21355 >seq5310 Length=161011 Score = 96.9 bits (106), Expect = 1e-14 Identities = 356/550 (65%), Gaps = 16/550 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 |||||| | ||||| || | | | || || ||||| | || ||||| | | | Sbjct 63560 TTTGTTCTTTTCCCCATAGAATATCATGATATCTGGCATTTCTACAAAAAGGCGGTGGCT 63501 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || |||||| | || || ||||| ||||||||| | || ||||| | ||| Sbjct 63500 TCTTTCTGGACTGTAGAAGAGGTGGATTTGTCCAAAGACTTCACACATTGGGAGTCACTT 63441 Query 133196 ACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | | | ||| |||||||| || |||| | || || || ||||| ||||||||||| Sbjct 63440 AAGGTTGGGGAACGTCATTTTATATCATATG-TGTTGGCATTCTTTGCGGCGAGTGATGG 63382 Query 133255 TATTGTTCTTGAAAATTTA--GGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || ||||| ||||| ||| ||| ||| |||| ||| || || | | || | Sbjct 63381 AATAGTTCTAGAAAACTTACTGGA--ACGCTTTAGTCAAGAGGTACAGATCCCGGAGGTT 63324 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372 || ||||||||| | ||||| || || || ||||| |||||| | || ||| Sbjct 63323 CGCTGTTTTTATGGGATGCAGATAGCTATCGAGAATATTCATTCTGAAATGTACTCTCTA 63264 Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAA--GCACAAACTATTCAACGCCATTA 133430 ||||| ||||| || ||||||| || | |||| || || ||||| || || | Sbjct 63263 CTAATCGATACGTATATCAAAG--ACTCTAAAGAAAGAGACTTTCTTTTCAATGCTATAA 63206 Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA---CA 133487 || | | ||||| | || ||| || | ||||| | | ||||| || | Sbjct 63205 GCAACCTAACTTGTGTAGCGAAAAAAGCTCAATGGGCATTGGATTGGATTGGTGATTCTA 63146 Query 133488 AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCA 133547 || | || ||||| || | ||||| ||||| | |||||| || |||||||| Sbjct 63145 AGTCTACG---TTTGCAGAACGCTTGGTTGCCTTTGCAGCAGTAGAAGGAGTTTTTTTCT 63089 Query 133548 GTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 || ||| |||| |||||||| || ||||| || || | |||||| ||| | Sbjct 63088 CCGGCAGCTTCGCGGCTATATTTTGGCTGAAGAAGCGAGGACTTATGCCTGGATTGTCCT 63029 Query 133608 TTTCTAACGA 133617 || ||| || Sbjct 63028 TTAGTAATGA 63019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471345253257176