Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4755 152 5e-32 seq3731 134 1e-26 seq4124 102 7e-17 >seq4755 Length=318840 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || ||||| || ||||| | ||||| || | | Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || ||||| |||||||||||| Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || || |||||||||||| | | |||| || || ||| Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280542 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || ||||||||||| ||| | || || || Sbjct 280543 ATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGGTGG 280589 Score = 149 bits (164), Expect = 6e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || ||||| || ||||| | ||||| || | | Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || ||||| |||||||||||| Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || || |||||||||||| | | |||| || || ||| Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280086 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| ||||| |||||||||||| Sbjct 280087 ATCCAAAAGGAGTCGACTCTACACTTGGTG 280116 Score = 149 bits (164), Expect = 6e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || ||||| || ||||| | ||||| || | | Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || ||||| |||||||||||| Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || || |||||||||||| | | |||| || || ||| Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280314 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| ||||| |||||||||||| Sbjct 280315 ATCCAAAAGGAGTCGACTCTACACTTGGTG 280344 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || ||||| || ||||| | ||||| || | | Sbjct 279679 ATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279738 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || || || |||||||||||| Sbjct 279739 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCAA 279798 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || || |||||||||||| | | |||| || || ||| Sbjct 279799 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 279858 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| ||||| |||||||||||| Sbjct 279859 ATCCAAAAGGAGTCGACTCTACACTTGGTG 279888 >seq3731 Length=1156867 Score = 134 bits (148), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || |||||||| ||||| ||||| || | | Sbjct 1054527 ATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCTGCT 1054586 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | ||| | || || || |||||||| ||||| || || || || |||||| Sbjct 1054587 GATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGATCAA 1054646 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || ||||| ||||| ||| |||| | | || || |||||| Sbjct 1054647 CAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTATAAC 1054706 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTGTTGCGATTGCGCGGAGG 24930 || || | ||||| ||||| || |||||| | ||| | || || || Sbjct 1054707 ATACAGTAAGAATCTACACTTCATCTTGGTTCTTCGACTTCGTGGGGG 1054754 >seq4124 Length=298687 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || | || || || || |||||| | || || || | | Sbjct 14732 ATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 14673 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || |||||||| |||||||| || ||||| || ||| Sbjct 14672 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14613 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || |||||| |||| ||| | | | || || || ||| Sbjct 14612 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14553 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || ||||| Sbjct 14552 ATTCAGAAGGAGTCTACTTTACAC 14529 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | || || || | | Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || |||||||| |||||||| || ||||| || ||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || |||||| |||| ||| | | | || || || ||| Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || ||||| Sbjct 13868 ATTCAGAAGGAGTCAACTTTACAC 13845 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | || || || | | Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || |||||||| |||||||| || ||||| || ||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || |||||| |||| ||| | | | || || || ||| Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || ||||| Sbjct 14096 ATTCAGAAGGAGTCAACTTTACAC 14073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | || || || | | Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| |||||||| || ||||| || ||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || |||||| |||| ||| | | | || || || ||| Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || ||||| Sbjct 14324 ATTCAGAAGGAGTCAACTTTACAC 14301 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | || || || | | Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || ||||| |||||||| || ||||| || ||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || |||||| |||| ||| | | | || || || ||| Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13641 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || ||||| Sbjct 13640 ATTCAGAAGGAGTCAACTTTACAC 13617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449756737061440