Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_022612.1 Length=42940 Score E Sequences producing significant alignments: (Bits) Value seq16058 123 7e-24 >seq16058 Length=1913 Score = 123 bits (136), Expect = 7e-24 Identities = 507/787 (64%), Gaps = 28/787 (4%) Strand=Plus/Plus Query 21032 AACATTGGCGCCAGATGGTCTATTGATCAAATGGATACCGTTAACCCGTTCAATCACCAC 21091 |||||||||||||| |||||| |||| | |||||| | || || || || || |||||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 21092 CGCAATTGGGGTCTTAAGTACCGTTCGCAGCTGTTGGGCAACAGCCGATAT-TGCCGGTT 21150 || ||| || || ||||| || ||| ||||||| |||| ||| |||| || Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCC-TTT 193 Query 21151 TCATATTCAGGTTCCGCAGAAATACTTTGCTATTAAAAATCTGCTCCTTCTACCTGGAAC 21210 || || || || || || |||| ||||||| | || || || || ||||||||||| | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 21211 GTATACATACGAATGGGTCCTGCGCAAAGATCCCAACATGATCCTACAGTCAAGT---CT 21267 || || || || ||| | | | || | | |||||| |||| || |||| || Sbjct 254 CTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCA---AAGTTCCCT 310 Query 21268 CGGGAATGATTTGAGAGCCGACGGGGCTTCCATCGTTTATTCCGAGGTTAACCTCATGGC 21327 || ||||| | ||| | || || ||| ||| || || | |||||| || Sbjct 311 TGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGC 370 Query 21328 TAATTTTATGCCAATGGATCACAACA-CGAGCAATCAGTTAGAGCTTATGCTGCGCAACG 21386 | || | || |||| |||||||| || | | || ||| ||||||||||||| Sbjct 371 CACCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAGC-CATGCTGCGCAACG 429 Query 21387 CTACTAACGACCAGACCTTCGCTGACTACCTC---GGCGCTAAAAACGCTTTGTATCAGG 21443 ||| || || ||| | ||| ||||||||| | ||| || | |||| || | Sbjct 430 ATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCT-AACATGCTT--TACCCCA 486 Query 21444 TACCGGCGGGGTCAACCGCTTTGACTATCAACATACCAGCTCGAACATGGGAAGGTATGC 21503 | || || ||||| | | || ||| ||| |||| | |||| || | Sbjct 487 TCCCTGCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCA 546 Query 21504 GAGGCTGGTCATTCACTCGCGTTAAGGCGTCGGAAACTCCTCAACTAGGAGCTCAGTACG 21563 | |||||||| ||||| | | || | ||| ||||| || ||| | || || Sbjct 547 GGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCG 606 Query 21564 ACGTAAACTTTAAATACTCAGGTAGCATTCCTTATTCCGACGGTACTTTTTACCTGACTC 21623 | |||| || || || ||||| || || || ||||||||||| | | Sbjct 607 ATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACC 666 Query 21624 ACACTTTCCGCAACATGAG-TGTAT--TATTCGACACATCTATCAACTGGCCTGGTAACG 21680 ||||||| ||| | | | | || | || ||| | || ||| ||||||||| || | Sbjct 667 ACACTTT---CAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATG 723 Query 21681 ACCGACTCCTTGCGCCTAACATGTTCGAAATCAAGCGTAACGTGAGCATCGATAGCGAGG 21740 || | || | | || || ||| ||||||||||| | ||| ||| | || | Sbjct 724 ACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTG------GATGGGGAAG 777 Query 21741 GATTCAACATGTCTCAGTGCGATATCACAAAGGATTGGTTCCTCGTTCAAATGGCAACCA 21800 ||| ||| || | || ||| | || || || || |||||||| ||||| ||| ||| Sbjct 778 GATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCA 837 Query 21801 ATTACAA 21807 | ||||| Sbjct 838 ACTACAA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137245564846752