Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_022613.1 Length=43686 Score E Sequences producing significant alignments: (Bits) Value seq16058 111 4e-20 >seq16058 Length=1913 Score = 111 bits (122), Expect = 4e-20 Identities = 221/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 20432 AACGTGGGTGCCAGATGGTCCATCGACCAGATGGACAACGTCAACCCGTTTAACCACCAC 20491 ||| | || ||||| ||||| | |||| |||||||| || || || |||||||||||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 20492 CGAAATTGGGGTCTCAAATACAGATCTCAGCTCCTCGGAAACAGCCGATA-CTGCCGGTT 20550 || ||| || || ||| | || ||| || || || |||| || |||| || Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCC-TTT 193 Query 20551 CCACATTCAGGTTCCGCAGAAATATTTTGCCATTAAAAACCTGCTGCTGCTGCCGGGGAC 20610 |||||| || || || || |||| ||||| | || ||||| || || || || || | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 20611 CTATACCTACGAATGGGTCTTGCGCAAAGATCCGAATATGATCCTTCAATCTAGCCTGGG 20670 ||| ||||| || ||| ||| | || | | ||| ||| |||| ||| | ||| || Sbjct 254 CTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGG 313 Query 20671 GAACGATCTCAGGGCGGATGGCGCTCAGATTGTATACACGGAAGTCAACCTGATGGCCAA 20730 || || ||||| | ||||| ||| | || | ||| ||||||| |||| Sbjct 314 AAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCAC 373 Query 20731 TTTCATGCCCATGGATCACAATACC 20755 ||| | ||||||| |||||| ||| Sbjct 374 CTTCTTCCCCATGGCTCACAACACC 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139632054786048