Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4124 93.3 3e-14 seq4755 87.8 1e-12 seq3731 82.4 5e-11 >seq4124 Length=298687 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| |||| | || |||| |||| || || || ||||| Sbjct 13857 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 13916 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| ||||| | || | || || || || | ||||| ||| || | Sbjct 13917 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCAC--A 13974 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | | ||| || || | || || ||||| ||||| | ||||| Sbjct 13975 TTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTC 14034 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 14035 ACAAAGATCTGCAT 14048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| |||| | || |||| |||| || || || ||||| Sbjct 14085 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14144 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| ||||| | || | || || || || | ||||| ||| || | Sbjct 14145 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCAC--A 14202 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | | ||| || || | || || ||||| ||||| | ||||| Sbjct 14203 TTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTC 14262 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 14263 ACAAAGATCTGCAT 14276 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| |||| | || |||| |||| || || || ||||| Sbjct 13629 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 13688 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| ||||| | || | || || || || | ||||| || || | Sbjct 13689 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCAC--A 13746 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | | ||| || || | || || ||||| ||||| | ||||| Sbjct 13747 TTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTC 13806 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 13807 ACAAAGATCTGCAT 13820 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| |||| | || |||| |||| || || || ||||| Sbjct 14313 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14372 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| ||||| | || | || || || || | ||||| || || | Sbjct 14373 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCCTTCAC--A 14430 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | | ||| || || | || || ||||| ||||| | ||||| Sbjct 14431 TTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTC 14490 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 14491 ACAAAGATCTGCAT 14504 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| |||| | || |||| |||| || || || ||||| Sbjct 14541 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14600 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| ||||| | || | || || || || | ||||| ||| || | Sbjct 14601 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCAC--A 14658 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| ||| | | ||| || || | || || ||||||||||| | ||||| Sbjct 14659 TTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTA 14718 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 14719 ACGAAAATCTGCAT 14732 >seq4755 Length=318840 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || | |||| |||| ||||| ||||| || || || Sbjct 279870 CTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 279811 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| | ||||| || || | || | ||||||||| || | || || ||| || | Sbjct 279810 GATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGGATCTTAGCTTTCAC--A 279753 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| | | ||| || || | || || ||||| || || || |||||| Sbjct 279752 TTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTT 279693 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 279692 ACAAATATCTGCAT 279679 >seq3731 Length=1156867 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34792 CTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAG 34851 ||| ||||||||||| || | | | | |||| |||||||| || || || || || || Sbjct 1054712 CTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAG 1054653 Query 34852 TCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTAT 34911 ||||| || ||| | || | ||||| || || | ||||| || || | | | || Sbjct 1054652 ACGTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGATTTTAGCNTTAACTGCTTCAAT 1054593 Query 34912 CGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGAT 34971 | ||| | ||| || |||| ||||| || || ||||| || || || ||||| || Sbjct 1054592 TGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCCGTAAGTGTTTTCACAAAAAT 1054533 Query 34972 CTGCATG 34978 ||||||| Sbjct 1054532 CTGCATG 1054526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325593374944712